Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00671X
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    27   2.7  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.7  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   4.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   6.2  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   8.2  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 486 KTPSTDGHIILSGVQDSDESVHFNTHL 566
           K  ST+G + + G QDS++ + +N HL
Sbjct: 27  KNSSTNGSVNIEGTQDSND-LQYNAHL 52


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 235 KDKKYPDRRAMGFPFDRPSSSATSLQDFILPNMGLQDITIQLQNVTEPN 89
           K K+  + RAM   F +PS    S + FI     L    ++ + VT+P+
Sbjct: 203 KKKRDKETRAMA-SFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPS 250


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = -1

Query: 539  VTVLNAGENNMSVSRRSLP*LFRLNRHSATYPLRAMILDATTSLPSITAAAAGPSTCSCP 360
            V+V +    + SV+ +  P   RL   SAT P        +T+LPS +A +  P   S  
Sbjct: 1038 VSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAG 1097

Query: 359  RALKPACPSNCSLCYP 312
            R+   A  ++  L YP
Sbjct: 1098 RS-STAASTSAPLTYP 1112


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 336 FQLFVMLSNYDLDRIDQDDGKQLTCVEGRASVD*RIR 226
           +Q  + L  YD++ +D D+  +   +  R +VD R+R
Sbjct: 80  YQQNLELDRYDIEELDDDNDLEELDIGARRAVDARLR 116


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 419 TTSLPSITAAAAGPSTCSCPRALKPACPS 333
           T S   ++ A++ PS CSCP ++K + PS
Sbjct: 301 TVSSGPLSTASSIPSNCSCP-SVKSSGPS 328


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 142  LVE*SPGGWWRCLKVGRTG 198
            +V+  P GWW  LK G  G
Sbjct: 1135 IVQKEPSGWWLALKNGAEG 1153


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 247 SSTFHTSELFSIILIDPV*IIVG*HNEQLEGHAGFSALGHEHVLGPAAAAVIE 405
           SS    +E    I+ DP  ++    N    G +GF+ +G+  ++  A A  +E
Sbjct: 6   SSRIRNAEFAKKIVTDPAKLVPYFKNGDYVGWSGFTGVGYPKMIPNALARHVE 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,053
Number of Sequences: 5004
Number of extensions: 53910
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)