Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00671X
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 29 2.1
10_06_0145 + 11215895-11216860 29 2.1
08_01_0897 - 8839134-8839718 29 3.6
09_02_0529 + 10276063-10277439 28 4.8
02_05_0929 - 32798477-32798679,32798833-32798917 28 4.8
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 28 6.3
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095... 27 8.4
03_05_0751 - 27389910-27392105 27 8.4
03_02_0760 + 10960381-10960461,10960740-10961003,10961334-109616... 27 8.4
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 27 8.4
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 416 TSLPSITAAAAGPSTCSCPRALKPACPSNCSLCYP 312
T PSI AAA GP L+P P+ ++ YP
Sbjct: 517 TVRPSIQAAAPGPRWLRLAATLRPISPATAAVRYP 551
>10_06_0145 + 11215895-11216860
Length = 321
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Frame = -1
Query: 500 SRRSLP*LFRLNRHSA---TYPLRAMILDATTSLPSITAAAAGPSTCS-----CPRALKP 345
+R + P L R RH A + + A IL ATT+ + TAAAA P++ + PR +K
Sbjct: 175 ARLNFPELRRGGRHHAPALSASVDAKILQATTTTTADTAAAAAPASTNTTPPPSPRVVKT 234
Query: 344 ACPSNCSL 321
P CS+
Sbjct: 235 E-PGCCSV 241
>08_01_0897 - 8839134-8839718
Length = 194
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 395 AAAAGPSTCSCPRALKPACPSNCSLCYPT 309
A AAG S P +L+P PS S+ +PT
Sbjct: 158 AVAAGGSPAPAPSSLRPRRPSGMSIKWPT 186
>09_02_0529 + 10276063-10277439
Length = 458
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 509 MSVSRRSLP*LFRLNRHSATYPLRAMILDATTS-LPSITAAAA 384
M++SRR LP L R + P RA+ A T+ P+ AAAA
Sbjct: 1 MALSRRLLPLLLRRGSTPSLSPARALSTAAVTADAPAAAAAAA 43
>02_05_0929 - 32798477-32798679,32798833-32798917
Length = 95
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 461 HSATYPLRAMILDATTSLPSITAAAAGPS--TCSCPRALKPACPS 333
H+A L AM+L A++S + A AGP +C L P PS
Sbjct: 11 HAALLLLLAMVLVASSSSGVMAAKIAGPKYFQDTCSAVLNPGAPS 55
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 344 PASVPLGTSMCWGQPQPQ*LKVVRSLRRGSL 436
P+S+PL +S +GQP P ++ R +R+ SL
Sbjct: 96 PSSLPLPSSTRFGQPDPLAGRLGRQIRKPSL 126
>08_02_1101 -
24308433-24308978,24309195-24309364,24309443-24309542,
24310337-24310500,24310960-24310996,24311222-24311262,
24313877-24314093
Length = 424
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 144 QTWACRTSLFNCKTSPNLTHGTLPCQ 67
+ W R+S +C +P +G LPC+
Sbjct: 69 EEWEGRSSSVDCPVTPRKMYGNLPCR 94
>03_05_0751 - 27389910-27392105
Length = 731
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 241 GLKDKKYPDRRAMGFPFDRPSSSATS 164
G K PDR+ + +P D PS S+TS
Sbjct: 118 GHKFPPSPDRQLVAWPLDSPSESSTS 143
>03_02_0760 +
10960381-10960461,10960740-10961003,10961334-10961619,
10961637-10962394
Length = 462
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 461 HSATYPLRAMILDATTSLPSITAAAAGPSTCSCPRALKPACPSNCSLCYPTMI 303
+SA+ A DA S S T G + S P L+PA S PT++
Sbjct: 235 NSASAASLATTRDAAASSASATTRDGGTAAASSPTVLRPAHVGAASSSSPTVL 287
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 458 SATYPLRAMILDATTSLPSITAAAAGPSTCSCP 360
+AT ++A++ S + AAA GP+ CS P
Sbjct: 277 AATAVIQALMAADEASAAGVAAAADGPAACSLP 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,012
Number of Sequences: 37544
Number of extensions: 394916
Number of successful extensions: 1171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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