Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00668X
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 29 0.30
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 29 0.39
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 2.1
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 2.8
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 2.8
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 26 3.7
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.7
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 25 4.8
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 8.4
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 29.5 bits (63), Expect = 0.30
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 175 CSAGRVCEINEHGDAMCNCIKDCPYETT 258
C+A R+C++ E C+ DC TT
Sbjct: 974 CTASRICKVREIASLSLTCLLDCSKMTT 1001
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.39
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 379 TWWYCGP--RH*SELSRHKHRWRYTSQSD 299
T+WY P RH E + H W Y+S D
Sbjct: 44 TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 346 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 453
LI + +N T F + E+ CL LK + + SP+
Sbjct: 82 LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 81 FCLMVSLLVQALRHSVLDVFSLRD 10
FCL ++ ++ LR+SV V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 2.8
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +3
Query: 240 LSLRDDSRRMVCTNFNETWQSDCEVYRQRC----LCLDNSDQCRGPQYHHVQIEYYGTC 404
+ L D + R++ F+++W+ E Y LD+SD C P H + G C
Sbjct: 1 MELDDFNSRILSQIFDKSWKVRFEAYESLLHALNRALDDSDVCFQPWIHDPALWKQGLC 59
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 395 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVV 252
++ LN+ V + +++++E A + I PG +E+ ASG +
Sbjct: 80 IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSI 127
>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 25.8 bits (54), Expect = 3.7
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Frame = +2
Query: 131 KTKKSTWKTLA*KSTAAQDVS---AKSTNTETPCVTASRTVPTRRLQTHGVHKLQRNLAI 301
K KK T A K T +D+ AK E+ V R+ Q H + R
Sbjct: 19 KAKKGTTIPKARKKTLTKDLQVQVAKELEQESSSTFRFAYVFPRKAQNH-YYSPSRTHTS 77
Query: 302 GLRSIPPAMLMPRQL*SVPWSAIPPRSNRVLRNVPR 409
++ P + L PWS I SN+ +R R
Sbjct: 78 SIKKKRPKLCSNINL--TPWSLIDSTSNKSIREQSR 111
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 224 VTASRTVPTRRLQTHGVHKLQRNLAIGLRSIPPAMLMPR 340
+ ASR R+ + + +RN+A+GL+S PA+ R
Sbjct: 10 LAASRIEILRQKEEALAKQARRNVALGLKSYSPALAKAR 48
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 6.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 86 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTET 217
P+ +TF+ +L R+ K +W L S+ + V K+T ET
Sbjct: 295 PQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKATLLET 336
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -1
Query: 423 CSQAFLGTFRNTRFERGGIADHGTDQSCRGISIAGGILRNP 301
C FLG F F H + GI++ G RNP
Sbjct: 709 CPGVFLGAFGMVGFPSFHTLKHKAELVYHGINVFGNESRNP 749
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.128 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,834
Number of Sequences: 5004
Number of extensions: 35455
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -