Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00668X
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 0.91
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 30 1.2
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 30 1.2
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 2.1
08_01_0843 - 8276619-8278991 29 2.1
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 29 2.8
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 29 2.8
11_06_0344 + 22540436-22540737,22541304-22543545 28 3.7
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 4.8
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 27 8.5
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276... 27 8.5
04_04_1395 + 33219711-33220629,33220750-33220787 27 8.5
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 27 8.5
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382... 27 8.5
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 30.3 bits (65), Expect = 0.91
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 298 NRIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 468
++I S + S +I A+ RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 380 HKIGPVEESASLPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 29.9 bits (64), Expect = 1.2
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = +3
Query: 228 LHQGLSLRDDSRRMV-----CTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYHHVQIEY 392
+H+ L+ D+ R V CTN + DC R C D+ QCRG + + E
Sbjct: 213 VHEVLNTNDERRIDVDVCPMCTNVRLVF--DCT--RDGCRRKDSWAQCRGCFFCVARCET 268
Query: 393 YGTCREMPDCTESEM--SDFPRRMRDWL 470
G C ++ + +E+E+ SDF M WL
Sbjct: 269 CGGCIDLEELSETELACSDF-LCMECWL 295
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 328 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 495
+Y S L+S V R K+S++ + C L C S CG F T CA +L
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 244 PYETTPDAWCAQTSTKPGNRIAKYTASDAY 333
PY TPDA A + T+P ++ +A +AY
Sbjct: 384 PYTQTPDADSATSGTQPAAKLNSISAMEAY 413
>08_01_0843 - 8276619-8278991
Length = 790
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +1
Query: 175 CSAGRVCEINEHGDAMCNCIKDCPY----ETTPDAWCAQTSTKPGN 300
C C++ G+ C+C+ + ++T W AQT GN
Sbjct: 300 CGPNSFCQVTSSGETSCSCLPGFEFLSANQSTQGCWRAQTGGCTGN 345
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Frame = +1
Query: 175 CSAGRVCEINEHGDAMCNCIKDCPY----ETTPDAWCAQTSTKPGNRIAKYTASDAYAST 342
C C++ G+ C+C+ + +TT W +T GN +S+
Sbjct: 300 CGPNSFCQVTASGETSCSCLPGFEFSSANQTTQGCWRVRTGGCTGN------SSNGDIGP 353
Query: 343 TLISAVVRNTTTFKSSITERAE-KCLTALKARCLTSPVACGTG-FLTSCA 486
T +V+NT+ S + + KA CL S AC F T C+
Sbjct: 354 TATMVMVKNTSWSDLSYNVPPQTTTMEECKAICL-SDCACEIAMFDTYCS 402
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Frame = +1
Query: 175 CSAGRVCEINEHGDAMCNCIKDCPYETTPDAWCAQTST-----KPGNRIAKYTASDAYAS 339
C A +C+ N + C C++ T+P AW + ++ R T +D +A
Sbjct: 303 CGAFGLCDANAPSTSFCGCLRGFS-PTSPAAWAMKDASGGCRRNVPLRCGNTTTTDGFAL 361
Query: 340 TTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVAC----GTGFLTSCATW 492
+ + + + IT E+C A C A G G + C W
Sbjct: 362 VQGVKLPDTHNASVDTGIT--VEECRARCVANCSCLAYAAADIRGGGGGSGCVIW 414
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 376 TFKSSITERAEKCLTALKARCLTSP 450
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 222 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 79
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/92 (22%), Positives = 40/92 (43%)
Frame = +2
Query: 14 RRLNTSSTECLRAWTRSDTMRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVS 193
RR + +A + + +K + S ++ K++KT K+ K + T S
Sbjct: 148 RRAIQEAQRAAKASAKEAGLSRKSVATVSTSNAAMSKQLKTVKTPPKKDLPQLTPPV-AS 206
Query: 194 AKSTNTETPCVTASRTVPTRRLQTHGVHKLQR 289
K T+ P + VP R+Q VH++++
Sbjct: 207 EKKTSEHPPDRDRKKDVPPPRMQFDNVHRVEK 238
>12_02_0385 +
18424617-18425594,18426811-18426850,18427581-18427636,
18428032-18428151
Length = 397
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 293 LAIGLRSIPPAMLMPRQL*SVPWSAIPPRSNRVLR 397
+A+ LR++P +L L S+P S+ PP +LR
Sbjct: 1 MALALRALPRRLLRHPLLHSMPLSSSPPDPRELLR 35
>04_04_1395 + 33219711-33220629,33220750-33220787
Length = 318
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 160 CLKVHCSAGRVCEINEHGDAMCNCIKDCPYETTP 261
C+ VH + + N +G A CNC K YE P
Sbjct: 268 CVSVHSAIDDAVDGNLYGRARCNCSKG--YEGNP 299
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 175 CSAGRVCEINEHGDAMCNCIKDCPYETTPDAWCAQTSTKPGNRIAKYTASDA 330
CS +VC + ++C C C + TPD+ + S NR+ T S A
Sbjct: 3 CSPSKVCSCPHYKGSLCFCDCGC-FGQTPDS--PRESRGKSNRVRGKTDSSA 51
>01_01_0521 -
3826257-3826616,3826758-3826918,3826992-3827049,
3827426-3827497,3827582-3827639,3828231-3828347,
3828630-3828782,3829182-3829346,3829814-3830132,
3830276-3830780
Length = 655
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 297 QSDCEVYRQRCLCLDNSDQC-RGPQYHHVQIEYYGTCRE 410
+ +C RC+ S +C R P + +YYG+CR+
Sbjct: 612 EDECTDEDDRCVSWAASGECDRNPVFMIGSSDYYGSCRK 650
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.128 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,507
Number of Sequences: 37544
Number of extensions: 276378
Number of successful extensions: 799
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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