Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00667
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    28   1.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   2.6  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   3.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.6  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   8.0  

>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 258 LFCLMVSLLVQALRHSVLDVFSLRD 184
           LFCL ++ ++  LR+SV  V +LRD
Sbjct: 448 LFCLRINPMLDGLRNSVATVDALRD 472


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 348  CSAGRVCEINEHGDAMCNCIKDC 416
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +1

Query: 301 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 480
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 481 AKY 489
           ++Y
Sbjct: 184 SQY 186


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 202 IEHGMSESLDEKRYHEAE*P-ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKST 378
           +   ++++ + + YH +  P + +TF+  +L  R+  K  +W  L   S+ +  V  K+T
Sbjct: 275 VSRSLNDATNMETYHWSPFPPQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKAT 332

Query: 379 NTET 390
             ET
Sbjct: 333 LLET 336


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 519 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 626
           LI  + +N T F   + E+   CL  LK + + SP+
Sbjct: 82  LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 565  ILDLNVVVLRTTALIRVVEHKHRWRYTSQSDCQVSLKF 452
            +L L +V+   T  I + E    W Y  +++  V LKF
Sbjct: 2339 LLRLEIVIKNATIFISIFEETGDWPYYIKNESGVLLKF 2376


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 428 CLVGTVLDAVTHGVSVFVDFADT-SC 354
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,474
Number of Sequences: 5004
Number of extensions: 49652
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)