Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00667
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191... 31 0.89
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 31 1.2
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 30 2.1
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 3.6
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 3.6
08_02_0794 + 21265399-21265683,21266047-21266160,21266861-212671... 29 3.6
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 3.6
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 29 4.8
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103... 29 4.8
03_02_0368 + 7840665-7841975 29 4.8
11_06_0344 + 22540436-22540737,22541304-22543545 28 6.3
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 28 6.3
03_02_0520 + 9092020-9092079,9092253-9093047 28 6.3
02_05_1345 + 35825552-35825834,35825914-35826022,35826098-358261... 28 6.3
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 8.3
>01_02_0070 -
10817675-10818024,10818228-10818893,10819094-10819124,
10820038-10820164,10820279-10820736
Length = 543
Score = 31.1 bits (67), Expect = 0.89
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Frame = -2
Query: 473 LPGFVEVCAHHASGVCLVGTVLD-AVTHGVSVFVDFADTSCAAVDFQARVFHVDFFVFIL 297
+P V AH +G+ G VL + G D A V R F +D F+
Sbjct: 32 IPISVAAAAHAQAGLGRTGPVLGFCIADGPETACDVAQQDGYTVTHSLRRFSLDPFLSSS 91
Query: 296 FIRDLVEKVVNSGYSASWYRFSSKLSDIPC----SMCSASEMSPRP 171
+R K + G S S +P S CSAS +SP P
Sbjct: 92 SVRRRQGKWSHRGCGGGGAAASGASSLLPLPPVRSSCSASHISPNP 137
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 494 PAMLMLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEMSDFPRRMRD 637
PA ++ D S +C P++ ++ +Y TC C SE+ +F R D
Sbjct: 494 PAEVLADGSLRCYAPEHQSGRVPFYVTCSNRIAC--SEVREFEYRDSD 539
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 494 PAMLMLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEMSDFPRRMRD 637
PA ++ D++ C P + ++ +Y TC C+E DF + D
Sbjct: 460 PAEIIADDTLVCHSPSHKPGRVPFYVTCSNRLACSEVREFDFRPQYMD 507
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 406 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 507
+R P QTPDA A + T+P ++ +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 339 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 473
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>08_02_0794 +
21265399-21265683,21266047-21266160,21266861-21267126,
21267336-21267834
Length = 387
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 429 DSRRMVCTNFNETWQSD--CEVYRQRCLCSTTLISAVVRNTTTFKSSITERA 578
D R V F+ W S C V QRC S T+ ++ R TTT SS ++ A
Sbjct: 314 DQRCSVSPTFHFKWSSYDYCLVLDQRCSVSPTISTSSGRVTTTAWSSTSDVA 365
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 504 LCSTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 641
L S +I A+ RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 391 LPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +1
Query: 154 PTSEQLGRGDISEAEH-IEHGMSESLDEKRYHEAE*PELTTFSTRSLMKRMKTKKSTWKT 330
P +E + A+H I++G++ + ++ R + ST + +T
Sbjct: 334 PPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPN--SSSGRSTLPPAASWGHRDLNTRT 391
Query: 331 LA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 468
A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 392 TATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>07_03_0908 +
22507565-22507810,22507925-22508872,22509314-22510337,
22510425-22510477
Length = 756
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 210 VLDVFSLRDVPAAELLRRWTFTSRGADPAVPTPHTLASAVQMTATTRAN 64
VLD +++D+P L+RW ++ P L Q+ T R N
Sbjct: 611 VLDTRNIKDLPPQYFLKRWRKDAKSGSPNCSYSFPLDGDPQLVQTKRYN 659
>03_02_0368 + 7840665-7841975
Length = 436
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 459 NETWQSDCEVYRQRCLCSTTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVA 629
+E W+ +R +T + TT K S+TE E L L+AR L +P A
Sbjct: 121 SEQWRLAAADLSRRLAAATRTRDEALEETTRLKHSLTE-LEMKLARLEARVLPTPTA 176
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 549 TFKSSITERAEKCLTALKARCLTSP 623
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 522 ISAVVRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 668
I + R K+S++ + C L C S CG F T CA +L
Sbjct: 299 IVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 210 VLDVFSLRDVPAAELLRRWTFTSR 139
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>02_05_1345 +
35825552-35825834,35825914-35826022,35826098-35826137,
35827481-35827522,35827605-35827694,35828400-35828470,
35829375-35829463,35829583-35829652,35829898-35830048,
35830146-35830235,35830549-35830647
Length = 377
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 375 NEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRCLCSTTLISAVVRN 542
N+H N + D ++ + C++ + CE+Y+ + C LI + V N
Sbjct: 167 NQHNSRELNGVPDLKTQSCVKLKKCSDCRFSAMQPCELYKSKSSCRHYLIVSAVTN 222
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 233 SSKLSDIPCSMCSASEMSPRPSCSDVG 153
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,670,070
Number of Sequences: 37544
Number of extensions: 404047
Number of successful extensions: 1276
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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