Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00665
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    48   1e-06
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.6  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    27   1.6  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.8  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    25   8.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   8.6  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 23/56 (41%), Positives = 32/56 (57%)
 Frame = +2

Query: 83  GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHITKFRLKYAFTAPTRLVRKAW 250
           GKL  +VD++D  RAL+D P S  PRQ IR   + +T   +K    A + +V K W
Sbjct: 23  GKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKW 78



 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
 Frame = +1

Query: 25  FARYVEPGRVALVADGPCKGKVS------ERGRRY*PNSCTG*WTRQWST*ATDPLKPTP 186
           F RYVE GRV LV  G   GK++      +  R    + C+  + RQ     +  L    
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSE-FPRQVIRYGSVVLTHIV 62

Query: 187 YHKIPPQIRVHSPYSSCEESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAA 363
             K+P   R         +   +  +  KW  S WA+KL  K+ R+Q+ D+DRF  +   
Sbjct: 63  M-KLPRGARS----GIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLK 117

Query: 364 RVKRNRARTAVFKSLK 411
           + +R +   AV K+LK
Sbjct: 118 KQRREQVNVAVAKALK 133


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -3

Query: 477 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 331
           HF    F+  +   G +  S H   LE+GS     LN  S     I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 214 VHSPYSSCEESVDSAKLNEKWTESQWA 294
           VH PY+S E++     +N+K  E  W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 150 PLPGPSTSARVWSITSTTLTNFPFTGT 70
           P+PG +T     ++ S T  N+P+TG+
Sbjct: 51  PVPGTTTIYPTSNVASNTSENYPYTGS 77


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +1

Query: 238 EESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVK 417
           E +    +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A  K +  +
Sbjct: 707 ERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRE 764

Query: 418 AARA 429
           +A A
Sbjct: 765 SAHA 768


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 297 LGPLTFCPFFIEFSTVHA 244
           +G L  C FF E+ T+HA
Sbjct: 177 VGNLNDCAFFFEWKTIHA 194


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 89   LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHITKFRLKYAFTAPTRLVRKAWTVLNSM 268
            L+++++  ++ RAL D       R  I LNQ  ++K + +   + PTR    AW   +S 
Sbjct: 882  LLNLIEAFNKARALRDSLDLNGKRYCIMLNQYVLSKHQ-RQLTSLPTR--EMAWAFHSSN 938

Query: 269  K 271
            K
Sbjct: 939  K 939


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 129 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 230
           ++ D AV Y  N+    NS++ ++A N  S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,618
Number of Sequences: 5004
Number of extensions: 46074
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)