Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00665
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    52   4e-07
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    46   2e-05
04_04_0387 + 24869594-24871480                                         31   0.72 
03_05_0161 + 21400580-21401695                                         30   1.7  
10_01_0048 - 659107-660402,661650-661867,662299-662335                 29   2.9  
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    27   8.9  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 40/135 (29%), Positives = 60/135 (44%)
 Frame = +1

Query: 19  MPFARYVEPGRVALVADGPCKGKVSERGRRY*PNSCTG*WTRQWST*ATDPLKPTPYHKI 198
           MPF R+VE GRVALV  G   G++         N                  K      I
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALV--DAPDMVRCQINFKRLSLTDI 58

Query: 199 PPQIRVHSPYSSCEESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 378
              I+     ++  ++++ A +  KW  S W +KL  +++RA + D+DRFK+  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 379 RARTAVFKSLKVKAA 423
            A       LK  AA
Sbjct: 119 GAIRQELAKLKKTAA 133



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +2

Query: 83  GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHITKFRL 205
           G+LV +VDV+DQ RALVD P   + R QI   +L +T  ++
Sbjct: 22  GRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKI 60


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 30/44 (68%)
 Frame = +1

Query: 241 ESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 372
           ++++ A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 86  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +2

Query: 83  GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHITKFRL 205
           G+LV +VDV+DQ RALVD P   + R QI   +L +T  ++
Sbjct: 35  GRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKI 73


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +1

Query: 241 ESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 420
           E V+S   +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ 
Sbjct: 493 EEVESDDESEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRM 548

Query: 421 ARAGTFGKK 447
           ARA T   K
Sbjct: 549 ARANTMVMK 557


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 183 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 88
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>10_01_0048 - 659107-660402,661650-661867,662299-662335
          Length = 516

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/84 (29%), Positives = 36/84 (42%)
 Frame = -3

Query: 297 LGPLTFCPFFIEFSTVHAFLTRRVGAVNAYLRRNFVIWSWFKRICCLGTPLPGPSTSARV 118
           LG L F  F +++S V  FLT ++   NA   RNF +W     I  L   +   S   R 
Sbjct: 17  LGQLAF--FGVQYSLV-TFLTTQLRQGNAEAARNFSMWQGTCYIAPLAGAIVADSCLGRY 73

Query: 117 WSITSTTLTNFPFTGTVGYQGDTP 46
            +I +         GT+   G +P
Sbjct: 74  RTILAFFSIYIIGMGTMALSGASP 97


>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
            25457561-25457740,25457823-25458017,25459059-25459157,
            25459508-25460137,25460250-25460591
          Length = 1440

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +1

Query: 172  LKPTPYH--KIPPQIRVHSPYSSCEESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDR 345
            +KP P +  K+P   R  S  S  E+  D+    ++ T+ + A  +  ++K+A   DY R
Sbjct: 859  IKPYPVYLMKVP---RFMSE-SHWEKIQDAQICLDELTQKRDAINVLRQKKKALCDDY-R 913

Query: 346  FKLTAARVKRNRARTA 393
             KL AAR +   ARTA
Sbjct: 914  EKLEAARQEERGARTA 929


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,997
Number of Sequences: 37544
Number of extensions: 315369
Number of successful extensions: 861
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)