Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00665
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 61 5e-10
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.28
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 32 0.28
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 32 0.28
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 29 3.5
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 29 3.5
Z47069-2|CAA87337.1| 313|Caenorhabditis elegans Hypothetical pr... 28 4.6
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 4.6
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z81130-8|CAB03416.1| 347|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 27 8.0
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 27 8.0
AY455927-3|AAR26304.1| 347|Caenorhabditis elegans phosphoglucos... 27 8.0
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 61.3 bits (142), Expect = 5e-10
Identities = 40/131 (30%), Positives = 63/131 (48%)
Frame = +1
Query: 19 MPFARYVEPGRVALVADGPCKGKVSERGRRY*PNSCTG*WTRQWST*ATDPLKPTPYHKI 198
M F R V+ GRV +A G +GK++ N T LK K
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 199 PPQIRVHSPYSSCEESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 378
++RV + + D+AK+ E + ++QWA+K+A + RA++TD++R+KL A+ RN
Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120
Query: 379 RARTAVFKSLK 411
R LK
Sbjct: 121 RIVRVELAKLK 131
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 280 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 426
E+QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 256 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 429
A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 256 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 429
A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 574 LYSLLKICLSHITCRRHKNNYF*LVFWSPSWC 479
LY++++ TCRR K W PSWC
Sbjct: 435 LYNMVRYAADSSTCRRVKLAEHFEEAWEPSWC 466
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 574 LYSLLKICLSHITCRRHKNNYF*LVFWSPSWC 479
LY++++ TCRR K W PSWC
Sbjct: 458 LYNMVRYAADSSTCRRVKLAEHFEEAWEPSWC 489
>Z47069-2|CAA87337.1| 313|Caenorhabditis elegans Hypothetical
protein F36G3.2 protein.
Length = 313
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -3
Query: 237 TRRVGAVNAYLRRNFV---IWSWFKRICCLGTPLPGPSTSAR-VWS-ITSTTLTNFPFTG 73
TR V AV+ +FV IW+ + +IC LG L P + V S I ++ P
Sbjct: 48 TRSVWAVSKTAENDFVGCVIWNEYNKICFLGFFLLAPEYRGKGVGSVIWDIAMSRMPADH 107
Query: 72 TVGYQG 55
T+G +G
Sbjct: 108 TLGLRG 113
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -3
Query: 456 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 343
RDI LA TS RS HL + + +PGT L S + L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 265 NEKWTESQWAQKLANKEKRAQMTDYDRFK 351
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>Z81130-8|CAB03416.1| 347|Caenorhabditis elegans Hypothetical
protein T23G11.2 protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 479 APRRRPKNQLEVIVFVSATGYVTKTDFKKR 568
A R N L+++ +++ GYVTK DF++R
Sbjct: 202 ALRSDDMNYLKLLEQLTSVGYVTKNDFEQR 231
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +1
Query: 166 DPLKPTPYHKIPPQIRVHSPYSSCEESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDR 345
D KP P+ K+PP+ + + EE + L +K E ++L + E+R
Sbjct: 431 DAFKPLPHPKLPPEELIIDSKTEIEELFEG--LTKKKIEKS-EKRLYDLERRINKVKISY 487
Query: 346 FKLTAARVKRNRARTAVF 399
KL K A VF
Sbjct: 488 GKLETHSDKYKEANEVVF 505
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +1
Query: 166 DPLKPTPYHKIPPQIRVHSPYSSCEESVDSAKLNEKWTESQWAQKLANKEKRAQMTDYDR 345
D KP P+ K+PP+ + + EE + L +K E ++L + E+R
Sbjct: 431 DAFKPLPHPKLPPEELIIDSKTEIEELFEG--LTKKKIEKS-EKRLYDLERRINKVKISY 487
Query: 346 FKLTAARVKRNRARTAVF 399
KL K A VF
Sbjct: 488 GKLETHSDKYKEANEVVF 505
>AY455927-3|AAR26304.1| 347|Caenorhabditis elegans
phosphoglucosamine acetyltransferaseprotein.
Length = 347
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 479 APRRRPKNQLEVIVFVSATGYVTKTDFKKR 568
A R N L+++ +++ GYVTK DF++R
Sbjct: 202 ALRSDDMNYLKLLEQLTSVGYVTKNDFEQR 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,121
Number of Sequences: 27780
Number of extensions: 267590
Number of successful extensions: 802
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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