Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00664
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 91 1e-19
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 54 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 46 4e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 38 0.001
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 38 0.002
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 36 0.005
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 36 0.007
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 33 0.038
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 33 0.050
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 32 0.066
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 32 0.087
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 32 0.087
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 31 0.12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 31 0.15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.15
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 30 0.27
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 30 0.35
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 29 0.61
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 28 1.1
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 28 1.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.1
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.3
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 4.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.3
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 26 5.7
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 26 5.7
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 25 7.6
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 7.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 10.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 91.5 bits (217), Expect = 1e-19
Identities = 41/87 (47%), Positives = 56/87 (64%)
Frame = +2
Query: 257 GQNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFE 436
G N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FE
Sbjct: 66 GANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFE 125
Query: 437 EANFPDYVQQGVKTMGYKEPTPIQLKA 517
EA FP+YV + VK +G++ PTPIQ +A
Sbjct: 126 EAGFPNYVLKEVKQLGFEAPTPIQQQA 152
Score = 66.1 bits (154), Expect = 4e-12
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
S TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTR
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTR 205
Score = 29.9 bits (64), Expect = 0.35
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 472 KDNGLQRTDAHSTQGWPIAMSGKNLVGVA 558
K G + Q WP+AMSG+++VG++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGIS 166
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 53.6 bits (123), Expect = 2e-08
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKT+A++LP HI Q P+ G+GPIA+++ PTR
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTR 501
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 278 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 454
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 455 YVQQGVKTMGYKEPTPIQLKA 517
+ ++GY++PT IQ +A
Sbjct: 428 QTISVINSLGYEKPTSIQAQA 448
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGD---GPIALVLAPTR 674
++TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTR
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTR 335
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +2
Query: 374 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQLKA 517
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ A
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAA 279
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPP--IPRGDGPIALVLAPTR 674
+QTGSGKTLAY+LP + + P R G A+++APTR
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTR 226
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKTLA+I+P I ++ Y+ DG ALV++PTR
Sbjct: 83 AKTGSGKTLAFIVPLIENL-YRKKWTSLDGLGALVISPTR 121
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 537 KEFSWRSQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
K+ + TGSGKTLAY+LP + + G G AL++APTR
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTR 82
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQLKA 517
F+ N +++ V G+K+ TP+Q A
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANA 31
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 537 KEFSWRSQTGSGKTLAYILPAIVHINYQPPIPRGD-GPIALVLAPTR 674
K+ +++TGSGKT AY++P + + Q I G AL+L PTR
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTR 98
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 33.1 bits (72), Expect = 0.038
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
+QTGSGKT A+ LP I + + P P A+VLAPTR
Sbjct: 90 AQTGSGKTAAFALPVIQEL-WNNPSPF----FAVVLAPTR 124
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQLKA 517
F+E D + + + +G+K PTPIQ +A
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEA 76
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 32.7 bits (71), Expect = 0.050
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKTLA+++P I + PR +G ++++PTR
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKPR-NGTGVIIISPTR 171
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 32.3 bits (70), Expect = 0.066
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 561 TGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
TGSGKT+AY+ P + + P G A+++APTR
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTR 125
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 31.9 bits (69), Expect = 0.087
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 537 KEFSWRSQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
K+ + TGSGKT A+I+P + + Y+P + L+L PTR
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTR 340
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 31.9 bits (69), Expect = 0.087
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 389 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
V VSG ++ P+ F ++ Q +K GY +PTP+Q
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQ 196
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKT A+ LP I + P G AL+L PTR
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTR 85
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 365 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQLKAGR*LCLER 541
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q +A +C R
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGR 59
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKT+A+ +PA+ ++N P LV++PTR
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLS--DNKSVPRVLVVSPTR 246
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 365 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQ
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQ 192
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKT A+++P I H+ AL+L+P R
Sbjct: 113 ARTGSGKTAAFVIPMIEHLK---STLANSNTRALILSPNR 149
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +3
Query: 561 TGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
TGSGKTL+Y++P + ++++ +PR +V+ PTR
Sbjct: 182 TGSGKTLSYVIPIVQCLSHR-TVPR---LRCVVIVPTR 215
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.61
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 552 RSQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
+++TG+GKTLA++L A + P +++L+PTR
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTR 122
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 552 RSQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++ TGSGKTLA+ +P + H ALV+APTR
Sbjct: 165 KADTGSGKTLAFGIPILEHCLRNVDAKYVQ---ALVVAPTR 202
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 552 RSQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
+SQ+G+GKT A+ L + ++ P P+ A+ LAP+R
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVPKPQ-----AICLAPSR 194
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 561 TGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAP 668
TG GK+L++++PA++ Q P + + LVL P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVP 1249
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 561 TGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAP 668
TG GK+L++++PA++ Q P + + LVL P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVP 1249
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 493 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 368
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 353 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 484
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 257 GQNMRRPDWDSVSLQPFNKNFYDPHPTVLKR 349
G N+ R W + P ++N Y HP L++
Sbjct: 207 GNNLTRTFWANDEPSPVDQNMYGSHPYYLEQ 237
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 353 PYEVEEYRNKHEVTVS 400
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 460 ATRCKDNGLQRTDAHSTQGWPIAMSGKNLVGVAKRV 567
A + ++N +QR + G PI KNL+ +AKR+
Sbjct: 97 ALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRM 132
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 257 GQNMRRPDWDSVSLQPFNKNFYDPHPTVLK 346
G N+ R W + + P ++N Y HP L+
Sbjct: 223 GNNLTRTFWANGNPTPLDRNAYGTHPFYLE 252
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 552 RSQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
R++ G+GKT A+++P++ ++ + + L+L PTR
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTR 122
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 176 AEFVASSXFGTT-VSTAIIPITRHDYF 99
A F SS F T V+ ++IPI R+DY+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRNDYY 474
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 482 PLSLHLVAHNQENL--LLQSIE 423
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 561 TGSGKTLAYILPAIV 605
TG GK+L Y LPA++
Sbjct: 543 TGGGKSLCYQLPAVI 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,817
Number of Sequences: 5004
Number of extensions: 58340
Number of successful extensions: 199
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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