Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00664
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 58 8e-09
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 55 4e-08
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 44 1e-04
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 40 0.002
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 39 0.003
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 39 0.003
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 39 0.003
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 38 0.009
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 36 0.026
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 33 0.19
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 32 0.43
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 32 0.43
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 32 0.43
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 31 0.57
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 31 0.57
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 31 0.57
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 31 0.57
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 31 0.57
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 31 0.57
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 31 0.75
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 31 0.75
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 31 0.75
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ... 31 0.75
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 31 0.99
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 30 1.7
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 30 1.7
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 2.3
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 29 3.0
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 29 4.0
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 29 4.0
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 27 9.2
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 27 9.2
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 27 9.2
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKTLA++LP HI QP + GDGPIA++LAPTR
Sbjct: 348 AKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTR 387
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 GQNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYF 433
G+ + + D V + F KNFY + + + EV+ YR + + +TV G++ PI+ +
Sbjct: 247 GRMLAQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTW 306
Query: 434 EEANFPDYVQQGVKTMGYKEPTPIQLKA 517
+ + +K Y +PT IQ +A
Sbjct: 307 AQCGVNLKMMNVLKKFEYSKPTSIQAQA 334
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKT AY+ PAIVHI QP + G+GP+A+++ PTR
Sbjct: 309 AKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTR 348
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +2
Query: 278 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 457
D + Q FNKNFY+ H + + +V +N + V G++ P+ F +F
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 458 VQQGVKTMGYKEPTPIQLKA 517
+ + ++ Y++PTPIQ A
Sbjct: 276 LMEAIRKSEYEQPTPIQAMA 295
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKTLA++LPA+VHI Q RG+GP LVL PTR
Sbjct: 173 AKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTR 212
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/84 (30%), Positives = 47/84 (55%)
Frame = +2
Query: 257 GQNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFE 436
G +R DW + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F
Sbjct: 74 GGRLRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFN 133
Query: 437 EANFPDYVQQGVKTMGYKEPTPIQ 508
EA P + + + +++PT IQ
Sbjct: 134 EAPLPGQIHE-LLYGKFQKPTVIQ 156
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 517 WPIAMSGKNLVGVAK 561
WPIAMSG++++ +AK
Sbjct: 160 WPIAMSGRDIISIAK 174
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +2
Query: 371 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQLKA 517
+R +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ +A
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQA 331
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGD----GPIALVLAPTR 674
++TGSGKT A++LP +V I P + R + GP A+++APTR
Sbjct: 345 AETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTR 388
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 6/46 (13%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQ-PPIPRGD-----GPIALVLAPTR 674
SQTGSGKTLA++LPA++HI+ Q + D P LVL+PTR
Sbjct: 128 SQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTR 173
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +1
Query: 472 KDNGLQRTDAHSTQGWPIAMSGKNLVGVAK 561
+ NG ++ +Q WP+ +SG++ +GV++
Sbjct: 100 RKNGFEKPSPIQSQMWPLLLSGQDCIGVSQ 129
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 389 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
V +G +V PI F + + +++++ +KT GY PTP+Q
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQ 193
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPP------IPRGDG-----PIALVLAPTR 674
+QTGSGKT A+++P + I P + G P ALVL+PTR
Sbjct: 210 AQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTR 260
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 365 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
++Y N V VSG V I++F EA F V + V GY +PTP+Q
Sbjct: 120 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 166
Score = 35.1 bits (77), Expect = 0.046
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 10/50 (20%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHI------NYQPPI----PRGDGPIALVLAPTR 674
+QTGSGKT A++LP I HI +PP R P ALVL+PTR
Sbjct: 183 AQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTR 232
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 365 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
++Y N V VSG V I++F EA F V + V GY +PTP+Q
Sbjct: 104 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 150
Score = 35.1 bits (77), Expect = 0.046
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 10/50 (20%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHI------NYQPPI----PRGDGPIALVLAPTR 674
+QTGSGKT A++LP I HI +PP R P ALVL+PTR
Sbjct: 167 AQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTR 216
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 365 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
++Y N V VSG V I++F EA F V + V GY +PTP+Q
Sbjct: 101 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 147
Score = 35.1 bits (77), Expect = 0.046
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 10/50 (20%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHI------NYQPPI----PRGDGPIALVLAPTR 674
+QTGSGKT A++LP I HI +PP R P ALVL+PTR
Sbjct: 164 AQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTR 213
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQP---PIPRGDGPIALVLAPTR 674
+ TGSGKT+ ++LP ++ Q P R +GP L++ P+R
Sbjct: 234 ASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSR 276
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 472 KDNGLQRTDAHSTQGWPIAMSGKNLVGVA 558
K G+ A QG P+A+SG++++G+A
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIA 234
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 537 KEFSWRSQTGSGKTLAYILPAIVHINYQPPIPRGD-GPIALVLAPTR 674
K R++TGSGKT A+++P + + + G GP A+++APT+
Sbjct: 127 KNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTK 173
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +3
Query: 552 RSQTGSGKTLAYILPAIVHINYQPPIPRG-----DGPIALVLAPTR 674
+++T +GKT A+ LP I I R DGP+AL+LAPTR
Sbjct: 424 QAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTR 469
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
S TGSGKTLA++LP + I P G AL+L+P+R
Sbjct: 53 SPTGSGKTLAFVLPMMRMIQNAKLQPADIG--ALILSPSR 90
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/40 (40%), Positives = 29/40 (72%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKTLA++LPAI + ++ + +G ++++PTR
Sbjct: 112 AKTGSGKTLAFLLPAI-ELLHKLNWKQHNGTGVIIVSPTR 150
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPI-PRGDG---PIALVLAPTR 674
+QTGSGKT A++LP + + + + G+G P ++L PTR
Sbjct: 596 AQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTR 639
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPI-PRGDG---PIALVLAPTR 674
+QTGSGKT A++LP + + + + G+G P ++L PTR
Sbjct: 596 AQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTR 639
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPI-PRGDG---PIALVLAPTR 674
+QTGSGKT A++LP + + + + G+G P ++L PTR
Sbjct: 596 AQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTR 639
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHI------NYQPPIPRGDGPIALVLAPTR 674
++TGSGKTLA+ +P + + + + GP AL++APTR
Sbjct: 33 AETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTR 78
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHI------NYQPPIPRGDGPIALVLAPTR 674
++TGSGKTLA+ +P + + + + GP AL++APTR
Sbjct: 200 AETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTR 245
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRG-DG---PIALVLAPTR 674
+QTGSGKT A++LP + + + + G +G P ++L PTR
Sbjct: 342 AQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTR 385
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 419 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
P + F +++ P +++ V+ GY TPIQ
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQ 325
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRG-DG---PIALVLAPTR 674
+QTGSGKT A++LP + + + + G +G P ++L PTR
Sbjct: 342 AQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTR 385
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 419 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
P + F +++ P +++ V+ GY TPIQ
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQ 325
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TG+GKTLA+ +P + ++ P G AL+L PTR
Sbjct: 133 ARTGTGKTLAFAIPILQKLSVDP-----YGIYALILTPTR 167
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TG+GKTLA+ +P + ++ P G AL+L PTR
Sbjct: 133 ARTGTGKTLAFAIPILQKLSVDP-----YGIYALILTPTR 167
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHI----NYQPPIPRGDGPIALVLAPTR 674
+QTGSGKT A++LP + + N G P ++L PTR
Sbjct: 385 AQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTR 428
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 419 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
P + F EAN + +Q+ V GY + TPIQ
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHI----NYQPPIPRGDGPIALVLAPTR 674
+QTGSGKT A++LP + + N G P ++L PTR
Sbjct: 385 AQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTR 428
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 419 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
P + F EAN + +Q+ V GY + TPIQ
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHI----NYQPPIPRGDGPIALVLAPTR 674
+QTGSGKT A++LP + + N G P ++L PTR
Sbjct: 385 AQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTR 428
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 419 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 508
P + F EAN + +Q+ V GY + TPIQ
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
protein Y47A7.1 protein.
Length = 1114
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 47 PASERMHSLNRHLQLNPKNNRVW 115
PAS ++H L+R LQLN N+ W
Sbjct: 773 PASHQLHCLSRALQLNKANDSAW 795
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 561 TGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
TG+GKT A++LP + + Y+P LVL PTR
Sbjct: 194 TGTGKTAAFVLPILERMIYRP--KGASCTRVLVLVPTR 229
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRG-----DGPIALVLAPTR 674
+ TGSGKTLA+++P ++ + + R P L++APTR
Sbjct: 780 AHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTR 824
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRG-----DGPIALVLAPTR 674
+ TGSGKTLA+++P ++ + + R P L++APTR
Sbjct: 780 AHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTR 824
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 188 RRIIAEFVASSXFGTTVSTAIIPI 117
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 188 RRIIAEFVASSXFGTTVSTAIIPI 117
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 561 TGSGKTLAYILPAIVHINYQP 623
TGSGKT+ Y+LP + + +P
Sbjct: 165 TGSGKTICYVLPVLAAVGSKP 185
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 561 TGSGKTLAYILPAIVH 608
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
++TGSGKTLA ++P ++ ++ G AL+++PTR
Sbjct: 120 AKTGSGKTLALVIP-VLEALWRAKWSPDYGLGALIISPTR 158
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
S+TGSGKT A+++P + + + G AL+++PTR
Sbjct: 68 SRTGSGKTAAFVIPMLQKLKRRDT----TGIRALMVSPTR 103
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 555 SQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
S+TGSGKT A+++P + + + G AL+++PTR
Sbjct: 68 SRTGSGKTAAFVIPMLQKLKRRDT----TGIRALMVSPTR 103
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 326 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 484
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 326 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 484
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 133 VETVVPNXEEATNSAIIRLGLATVAIDLEDLEALVGKKN 249
+ETV+ E N +RL A VA E LE++ GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 359 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQLKA 517
E +E E T + V PI FP+Y+++ +G K TP QL+A
Sbjct: 501 EEDEIEETAEKTTTKVTEDGPIT----TEFPEYIKKRNAIVGIKTLTPAQLEA 549
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 537 KEFSWRSQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
K+ ++Q+G+GKT + + + I+++ P + ALV+APTR
Sbjct: 67 KDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ-----ALVMAPTR 107
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 537 KEFSWRSQTGSGKTLAYILPAIVHINYQPPIPRGDGPIALVLAPTR 674
K+ ++Q+G+GKT + + + I+++ P + ALV+APTR
Sbjct: 67 KDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ-----ALVMAPTR 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,273
Number of Sequences: 27780
Number of extensions: 325660
Number of successful extensions: 1060
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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