Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00664
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       43   2e-06
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +2

Query: 386 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQLKA 517
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q  A
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHA 226



 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 555 SQTGSGKTLAYILPAI 602
           +QTGSGKT A+ +P I
Sbjct: 240 AQTGSGKTAAFAVPII 255


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 9   FFFFHRAQWSRWTLRQKE 62
           F FF+ A WS +  R++E
Sbjct: 427 FAFFNLAYWSTYLFREEE 444


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 9   FFFFHRAQWSRWTLRQKE 62
           F FF+ A WS +  R++E
Sbjct: 427 FAFFNLAYWSTYLFREEE 444


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 344 KRSPYEVEEYRNKHEVTV 397
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,533
Number of Sequences: 438
Number of extensions: 3788
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)