Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00662
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 29 0.61
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 4.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 5.7
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 26 5.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 7.5
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 7.5
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 26 7.5
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 25 10.0
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces... 25 10.0
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 25 10.0
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 29.5 bits (63), Expect = 0.61
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +3
Query: 246 LQKAIETFDQRRNRPTEFPEDVFKLSLMQHMAA--QFINLQAINRSK--NRKQ-FMMALS 410
LQK E + +R N + P+++F L +HM I+ ++ + K NRKQ F +
Sbjct: 3425 LQKIYEIYSERNNFSRDDPKELFTNELSKHMMELNSQISQESTDAEKLANRKQLFSRRIG 3484
Query: 411 FYTNHMSLFWDPDT 452
+ N L+ P T
Sbjct: 3485 MFENIQKLY-SPST 3497
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 501 LMLIYVRLPSRLDVSSMYRDPRKDSCDSCRMTTP 400
L+ IY RL LD++ +YR R S S + P
Sbjct: 264 LVSIYSRLRECLDIAQLYRTSRIKSASSHNFSVP 297
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 40 KIPNVIDEEKNKFIQYLGKELKCLQALNLQN 132
K+P+ D+E+ K +Q ++LK L N N
Sbjct: 1840 KVPHQFDDEEGKALQIFREKLKDLNCKNSMN 1870
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 395 HDGVVILHESHESFLGSRYMLLTSKRLGKRTYISIRTSLKLFHPELPDEMEREILKQFIK 574
H+G++ HE +L +K G+ T S++ + E+ ERE +K +I+
Sbjct: 165 HEGLLPAHEKLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKEREKIKSYIE 224
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 16 TYFDSKRQKIPNVIDEEKNKFIQYLGKELKCLQALNLQNNRHVITELKMNFSS 174
T++DSKR+KI EK+ ++ +G L L + LK +FSS
Sbjct: 242 TFYDSKREKICFTFPGEKH-YMTVMGSILALCYTPTLGTDSSTNEGLKKSFSS 293
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 121 NLQNNRHVITELKMNFSSFMEGLVNKEPPLDDNEYEAKYQESYRKPLRHSTSD 279
NL+ N VITEL+ + L N + E + + +++ K L +S +
Sbjct: 1245 NLERNEEVITELREKIETLKTDLANFRLNKEQLESQLQTEKAAVKKLENSNEE 1297
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 181 EGLVNKEPPLDDNEYEAKYQESYRKPLRHSTSDEIGLQNFQKMYSNYL 324
+G + + P+ N A+YQ S R H T DE L + SN L
Sbjct: 292 QGALPQHIPVPHNTEFAQYQPSSRDLQNHPTVDESRLSSVAPPASNTL 339
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 13 STYFDSKRQKIPNVIDEEKNKFIQYLGKELKCLQAL 120
+ + ++ +QKIP+ +D K +QY +L LQ L
Sbjct: 410 NNWLENLQQKIPSEVDNGKVSGLQYSAFKLLMLQRL 445
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 164 FILSSVITCLLFCRFNAWRHFSSLPKYWMNLFFSSSMTFG 45
F LS+ I L+ FN + W+ F +S T+G
Sbjct: 122 FYLSATILMLIVMSFNGYAILFGFVGAWIGFFLFASDTYG 161
>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 10.0
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 124 LQNNRHVITELKMNFSSFMEGLVNKEPPLDDNEYEAKYQESYRKPLRHSTSDEIGLQNFQ 303
L+N +V E + S ++ LDDN E +RK + H ++ + L NF
Sbjct: 12 LENVDNVKIESENAIPSNLQAFTKSLAVLDDNVSE------FRKRMNHLSATKQILDNFN 65
Query: 304 KMYSNYL 324
+ +S++L
Sbjct: 66 ESFSSFL 72
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 10.0
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 572 KSKYDDLRELNDAANETAIATAVNVYV-EKMEKATEFKGWWIPTLGIPYLVNLAN 733
K Y LR DA A + Y + +E+ E+K W I G+P + ++N
Sbjct: 430 KIPYLQLRVSPDAEEIGVDADQIGEYAFDYIEERREYKHWKISPAGVPEEIIISN 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,809
Number of Sequences: 5004
Number of extensions: 67868
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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