Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00662
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 31 1.5
12_02_0700 + 22259921-22260207,22264678-22264750,22265062-222658... 30 2.0
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104... 30 2.0
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 30 2.6
01_04_0005 - 15000085-15000363 29 3.4
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 29 4.5
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 28 7.9
>01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 211 DDNEYEAKYQESYRKPLRHSTSDEIGLQNFQKMY 312
D+ E + K+QE Y K +SD I L N Q +Y
Sbjct: 1104 DEEEKKIKFQELYEKYKHLQSSDPIALANIQLLY 1137
>12_02_0700 +
22259921-22260207,22264678-22264750,22265062-22265802,
22265849-22266424,22266505-22266957
Length = 709
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 52 VIDEEKNKFIQYLGKELKCLQALNLQNNRHVITELKMNFSSFMEGLVNKEPPLDDNEYEA 231
V D +++ + G+EL L +L ++N +I +LK+N S ++ L ++DN +
Sbjct: 468 VHDSKRSSVRKCAGEELVKL-SLESESNASIILKLKLNDSIVVDRLSEMVVDVEDNTFRT 526
Query: 232 KYQESYRK-PLRHSTSDE 282
+ + + H+T DE
Sbjct: 527 SAADILKHLCINHTTDDE 544
>02_04_0013 -
18910009-18910056,18910154-18910282,18910373-18910420,
18910532-18910594,18910675-18910713,18912107-18912180,
18913014-18913072,18913265-18913324,18913466-18913590,
18914054-18914112,18914356-18914419,18914516-18914569,
18914727-18914765,18916135-18916275
Length = 333
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +2
Query: 530 LPDEMEREILKQFIKSKY-DDLRELNDA--ANETAIATAVNVYVEKMEKATEFKGWWIPT 700
LP++ ERE +K+F+K K + REL A A + AI E E +K + + T
Sbjct: 250 LPED-EREKMKEFLKEKVRERKRELKQAKEARKKAIDDMDPKIKEAFENIQFYKFYPVKT 308
Query: 701 LGIPYLVNLANR--SSYHEEAKELL 769
L P + N+ R + Y+ A L+
Sbjct: 309 LDTPDVSNVKARYINRYYRNAHHLM 333
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 122 FNAWRHFSSLPKYWMNLFFSSS 57
FN+W+H+ P YWM FF S
Sbjct: 518 FNSWQHY-GCPNYWMLHFFKDS 538
>01_04_0005 - 15000085-15000363
Length = 92
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 336 MAAQFINLQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCL 461
M + I + I RS+N +A TN S+FW ++C L
Sbjct: 39 MGGRDIRVSKIQRSQNNVSHFLANRGRTNSCSVFWPDESCNL 80
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 363 AINRSKNRKQFMMALSFYTN-HMSLFWDPDTCCLHPNDLANEHILASEQA 509
A + K K+ + AL+ Y N H L D D C HP D++ + A + A
Sbjct: 5 ASTKVKKFKKNVAALTSYGNPHARLINDVDEACNHPGDVSGDVAKAFDSA 54
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 122 FNAWRHFSSLPKYWMNLFFSSS 57
FN+W+ + S P YWM F S
Sbjct: 705 FNSWKQYGS-PSYWMQTIFRES 725
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,676,307
Number of Sequences: 37544
Number of extensions: 401679
Number of successful extensions: 1132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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