Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00660
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    33   0.040
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos...    27   4.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.1  

>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 33.5 bits (73), Expect = 0.040
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 802 HTSTYNKTTYNIINVVKWI*KFAKNQYLSYLSARRVHHFELSESPPYAW 656
           H   Y +TTYNI+    W   + K+   S   A+   H ++  S P  W
Sbjct: 176 HLEVYGRTTYNIVLHNSWQASWFKSMLTSVRYAKHGDHIDIYVSDPLTW 224


>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/81 (22%), Positives = 45/81 (55%)
 Frame = -1

Query: 817 RLHCVHTSTYNKTTYNIINVVKWI*KFAKNQYLSYLSARRVHHFELSESPPYAWWVSMYK 638
           +L+C+ +S Y+K+ + +I V+  I +   + + + ++A       ++ESP     ++  K
Sbjct: 193 KLYCIGSSIYSKSFFVLIPVIPGIFRGTGDLFTALMAA------HIAESPDCTESLASIK 246

Query: 637 KSGLVKYIQVAHGLLDYDIIQ 575
           +  L K +++A   + +++IQ
Sbjct: 247 EDKLKKSVEMALSSV-HEVIQ 266


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 403 CQVSVCSVKSPFISYLRFRYS*FSAFLFTIFLSFSPVLCLI 281
           C V    VKS  ISY R  +  +   LF + LS S  +C+I
Sbjct: 174 CFVQFMEVKSALISYDRSLFKFYPIDLFVLLLSQS-FICII 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,990
Number of Sequences: 5004
Number of extensions: 72719
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)