Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00660
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119...    31   1.2  
07_01_0885 + 7353926-7354770,7354845-7355487                           29   3.7  
05_04_0409 - 21050479-21050637,21050732-21050872,21051170-210515...    28   8.5  

>01_01_0132 -
           1197988-1198206,1198255-1198356,1198518-1198821,
           1199221-1199292,1199384-1199420,1199527-1199585,
           1199844-1200128,1200293-1200465,1201020-1201213,
           1202245-1202374
          Length = 524

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = -1

Query: 814 LHCVHTSTYNKTTYNIINVVKWI*KFAKNQYLSYLSARRVHHFELSESPPY 662
           L CV  ST N+T Y   +VV  +     N+ +S LS RR HH    +  PY
Sbjct: 343 LPCVDESTTNQTLYQSKHVVVILVGIV-NRAISALSNRRPHHKHPGQFMPY 392


>07_01_0885 + 7353926-7354770,7354845-7355487
          Length = 495

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 494 APHVWYCLLSLPNPESSQSQAYLCQI 571
           AP +W+   SLPNP+  + ++Y  QI
Sbjct: 6   APDIWHWTRSLPNPKHWRGKSYYLQI 31


>05_04_0409 -
           21050479-21050637,21050732-21050872,21051170-21051541,
           21051699-21051701
          Length = 224

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 84  CHKEIFKVPVPLET 125
           CHK+I +VP+PLET
Sbjct: 101 CHKQIDRVPLPLET 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,061,202
Number of Sequences: 37544
Number of extensions: 433660
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)