Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00660
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical p...    31   1.1  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    29   4.3  
Z93393-8|CAB07697.2|  189|Caenorhabditis elegans Hypothetical pr...    29   5.7  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       28   10.0 
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    28   10.0 
AF016415-3|AAW88418.1|  658|Caenorhabditis elegans Hypothetical ...    28   10.0 
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    28   10.0 
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    28   10.0 

>Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical
           protein Y48E1B.16 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 260 GIAYKLVYQAQNWTKAKEYCEQEGAKLAVPKSE 358
           G  YK+  +  NW  A+ +CE+ G+ LA   SE
Sbjct: 237 GTKYKIFEERMNWNDAQLHCEELGSHLAYLDSE 269


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
 Frame = -1

Query: 835 LSTYNA-RLHCV----HTSTYNKTT-YNIINVVKWI*KFAKNQYLSYLSARRVHHFELSE 674
           LST  A RLH V    H + YN  T Y  I  ++    F +N  ++     +    +   
Sbjct: 119 LSTKRASRLHLVLNGLHVNIYNNLTKYTEIARIRRFDWFFENTNMNDARRPQTKPPDTCR 178

Query: 673 SPPYAWWVSMYKKSGLVKYIQVAHGLL 593
           SPP + W +M+   G+V +I+V+ G +
Sbjct: 179 SPPSSVWENMWNLLGIV-HIEVSAGCI 204


>Z93393-8|CAB07697.2|  189|Caenorhabditis elegans Hypothetical
           protein Y48E1B.9 protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 260 GIAYKLVYQAQNWTKAKEYCEQEGAKLAVPKSE 358
           G  Y+L  + ++W  A+ +C+  GA LA+  +E
Sbjct: 79  GSKYRLFEERKSWDNAERHCQGFGAHLAIIDNE 111


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 VYQAQNWTKAKEYCEQEGAKLAVPKSEVTYKW 373
           +Y   NW K+ E  EQE  K A  +  + +KW
Sbjct: 806 LYTISNWQKSFERFEQETNKNASAEWNILFKW 837


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
           protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 VYQAQNWTKAKEYCEQEGAKLAVPKSEVTYKW 373
           +Y   NW K+ E  EQE  K A  +  + +KW
Sbjct: 806 LYTISNWQKSFERFEQETNKNASAEWNILFKW 837


>AF016415-3|AAW88418.1|  658|Caenorhabditis elegans Hypothetical
           protein C02A12.8 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 424 IFLMVERCQVSVCSVKS---PFISYLRFRYS*FSAFLFTIFLSFSPVLCLIHQFVGY 263
           IF ++    +S    KS   P   +LRF Y  F   L   +L+   ++ ++HQ++ Y
Sbjct: 35  IFFVISGYLISKSLTKSKITPIHDFLRFYYRRFRRILPLYYLTIFLIVVMVHQWLPY 91


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform b
           protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 VYQAQNWTKAKEYCEQEGAKLAVPKSEVTYKW 373
           +Y   NW K+ E  EQE  K A  +  + +KW
Sbjct: 806 LYTISNWQKSFERFEQETNKNASAEWNILFKW 837


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform a
           protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 VYQAQNWTKAKEYCEQEGAKLAVPKSEVTYKW 373
           +Y   NW K+ E  EQE  K A  +  + +KW
Sbjct: 806 LYTISNWQKSFERFEQETNKNASAEWNILFKW 837


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,462,858
Number of Sequences: 27780
Number of extensions: 400370
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)