Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00658
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    42   1e-04
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.73 
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.1  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.8  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   6.8  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   9.0  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   9.0  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   9.0  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 302 FGSLIIGYARNPSLKQQLFSYAILGFALSE 391
           F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 594 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 508
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 766 CLEFCNVRALMLNMILIITVYKVRNRNNCSINIM-FTYNILLQIFVYT 626
           CL  C +    +N  ++  +   RN  +CS+N   F + I+    VY+
Sbjct: 88  CLRSCTIIYFSMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYS 135


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 253 VSDSGSSWFRSWYW 294
           V D G SWFR+ YW
Sbjct: 419 VLDCGMSWFRNEYW 432


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 50  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 163
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 219 DIDSAAKFIGAGQRQWE*LVPELVLEQSSAPSS 317
           D++SAA+FI +GQ +   LVP  ++  +S  SS
Sbjct: 31  DVESAAEFIFSGQLEKSRLVP--IMSSTSIASS 61


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 627 LHN*INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLSTPIVYTETSYVG 478
           L++ +NC+        +T    +H  G  SK S+ WL+T  +  E    G
Sbjct: 352 LNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWLATKWLRREIQKAG 401


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 184 QCGPSRPHRSLRTLTLLPNSLVLVSDSGSSWFRSWYWNSLRLPHHRLCQEPL 339
           +C PS P  SL+       SL+ V D   S+  S  WN    P  +L  EPL
Sbjct: 420 KCAPSSPTLSLQKHREHVKSLLYVPDLTPSFDGSDPWN----PSSQLLSEPL 467


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 124 HLQQYPPIHRWYLLSLHSSLQC 189
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 615 INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 511
           I C+  +     N H + HH   + +  SIP  +T
Sbjct: 116 IRCVYSEGPSTANAHANAHHQPAQTTTTSIPTSAT 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,193
Number of Sequences: 5004
Number of extensions: 66632
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)