Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00658
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    62   4e-10
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    62   4e-10
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    62   4e-10
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   4.8  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    28   6.3  
U67967-1|AAC47829.1|  413|Caenorhabditis elegans PTL-1B protein ...    28   8.4  
U67966-1|AAB97090.1|  453|Caenorhabditis elegans PTL-1A protein ...    28   8.4  
U38983-1|AAA80687.1|  436|Caenorhabditis elegans TAU-1b protein.       28   8.4  
U38982-1|AAA80686.1|  431|Caenorhabditis elegans TAU-1a protein.       28   8.4  
U00051-5|AAM29696.1|  252|Caenorhabditis elegans Protein with ta...    28   8.4  
U00051-4|AAK70645.1|  453|Caenorhabditis elegans Protein with ta...    28   8.4  
U00051-3|AAK70647.1|  413|Caenorhabditis elegans Protein with ta...    28   8.4  
U00051-2|AAK70646.1|  458|Caenorhabditis elegans Protein with ta...    28   8.4  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    28   8.4  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 302 FGSLIIGYARNPSLKQQLFSYAILGFALSE 391
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 46  FGALVIGYARNPSLKQQLFSYAILGFALSE 75



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 183 AVRSFQTTSVTKDIDSAAKFIGAG 254
           A R   TT   KDIDSAAK+IGAG
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAG 29


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 302 FGSLIIGYARNPSLKQQLFSYAILGFALSE 391
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 46  FGALVIGYARNPSLKQQLFSYAILGFALSE 75



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 183 AVRSFQTTSVTKDIDSAAKFIGAG 254
           A R   TT   KDIDSAAK+IGAG
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAG 29


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 302 FGSLIIGYARNPSLKQQLFSYAILGFALSE 391
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 70  FGALVIGYARNPSLKQQLFSYAILGFALSE 99



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 183 AVRSFQTTSVTKDIDSAAKFIGAG 254
           A R   TT   KDIDSAAK+IGAG
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAG 53


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 110 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 199
           C+    C +     D  CCPY + C A  P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 50  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 175
           N  C     P       +  C+  T C+S +   +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 155 HLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRT 12
           ++C  G CC  ++    +  G P   G  S G Q F  +  G R QR+
Sbjct: 103 YICSNGACCPNTNSNTCSTTGTPCFTGQISVGGQCFNSVNIGDRCQRS 150


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 435 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 307
           KSSR  I  ++  I     KP    E N C+ + FLA PM  E
Sbjct: 21  KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63


>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 603 PVDAHCRCNTHQSLHHYEGEV 541
           P+   CRCNT  +LH  EG V
Sbjct: 98  PIYVLCRCNTTNTLHRREGVV 118


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 402 RPIASDKAKPRMAYENNCCLREGFLA*PMMREPKTVPIPAPEPATPTVADQH 247
           R  +S  +KP +       +R   L  P ++   TV    PEPAT    D H
Sbjct: 356 RASSSASSKPEVQTTIPTEIRTSSLPTPFLKTSTTVTTTTPEPATVDYGDDH 407


>U67967-1|AAC47829.1|  413|Caenorhabditis elegans PTL-1B protein
           protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 MMREPKTVPIPAPEPATPTVADQ 250
           ++R+PK +P   P PAT T + Q
Sbjct: 214 ILRQPKPIPASLPRPATATPSSQ 236


>U67966-1|AAB97090.1|  453|Caenorhabditis elegans PTL-1A protein
           protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 MMREPKTVPIPAPEPATPTVADQ 250
           ++R+PK +P   P PAT T + Q
Sbjct: 214 ILRQPKPIPASLPRPATATPSSQ 236


>U38983-1|AAA80687.1|  436|Caenorhabditis elegans TAU-1b protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 MMREPKTVPIPAPEPATPTVADQ 250
           ++R+PK +P   P PAT T + Q
Sbjct: 192 ILRQPKPIPASLPRPATATPSSQ 214


>U38982-1|AAA80686.1|  431|Caenorhabditis elegans TAU-1a protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 MMREPKTVPIPAPEPATPTVADQ 250
           ++R+PK +P   P PAT T + Q
Sbjct: 192 ILRQPKPIPASLPRPATATPSSQ 214


>U00051-5|AAM29696.1|  252|Caenorhabditis elegans Protein with
           tau-like repeats protein1, isoform d protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 MMREPKTVPIPAPEPATPTVADQ 250
           ++R+PK +P   P PAT T + Q
Sbjct: 66  ILRQPKPIPASLPRPATATPSSQ 88


>U00051-4|AAK70645.1|  453|Caenorhabditis elegans Protein with
           tau-like repeats protein1, isoform a protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 MMREPKTVPIPAPEPATPTVADQ 250
           ++R+PK +P   P PAT T + Q
Sbjct: 214 ILRQPKPIPASLPRPATATPSSQ 236


>U00051-3|AAK70647.1|  413|Caenorhabditis elegans Protein with
           tau-like repeats protein1, isoform c protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 MMREPKTVPIPAPEPATPTVADQ 250
           ++R+PK +P   P PAT T + Q
Sbjct: 214 ILRQPKPIPASLPRPATATPSSQ 236


>U00051-2|AAK70646.1|  458|Caenorhabditis elegans Protein with
           tau-like repeats protein1, isoform b protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 MMREPKTVPIPAPEPATPTVADQ 250
           ++R+PK +P   P PAT T + Q
Sbjct: 214 ILRQPKPIPASLPRPATATPSSQ 236


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -3

Query: 230 RVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 111
           RV   ++ C    P CR   +LC  SRY   M  YC K    C
Sbjct: 321 RVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,213,156
Number of Sequences: 27780
Number of extensions: 412415
Number of successful extensions: 1600
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)