Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00655
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 97  WSTRAFSKGRRGVTYVFENTDGTL 26
           ++  + S  +  +TYV++N +GTL
Sbjct: 202 FAIESISYEQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 97  WSTRAFSKGRRGVTYVFENTDGTL 26
           ++  + S  +  +TYV++N +GTL
Sbjct: 202 FAIESISYEQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 97  WSTRAFSKGRRGVTYVFENTDGTL 26
           ++  + S  +  +TYV++N +GTL
Sbjct: 253 FAIESISYEQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 97  WSTRAFSKGRRGVTYVFENTDGTL 26
           ++  + S  +  +TYV++N +GTL
Sbjct: 202 FAIESISYEQTAITYVWKNDEGTL 225


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 337 LQEVLNLQTKHIIEFHLFFIQYSNTNQTRRRALPSN 230
           ++ V N+  K  + F L F+Q  N N+ + + + SN
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNE-KNQIMKSN 76


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 201 TLEEKDPKRLFEGNALLRV 257
           T EEK P+  F G  L R+
Sbjct: 17  TPEEKRPRTAFSGEQLARL 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,814
Number of Sequences: 438
Number of extensions: 3405
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)