Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00654
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.48 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   4.5  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   5.9  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   7.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 307  GAPEYQSNVDGMRDDNETKPLKRKEPVDDETSPKRQCPEIV 429
            G+    SNV  + D+  T PLK  +P  +  +P    P++V
Sbjct: 1408 GSVSSGSNVSSIEDETSTMPLKASQPT-NPGAPSNHAPQVV 1447


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 186  RAFIALVN*TISAGEPIMRNSLICCCASSSVMRSDLGPVW 67
            +A+I L+  TI+  +P +  + + CC S     S + P W
Sbjct: 1079 KAYIYLLQYTIAVCKPTIAPTNVACCCSK--CNSTMSPFW 1116


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 262 DADADDCGDRLAAAPGAPEYQSNVDGMRDDNETKPLKRKEPVDD 393
           DA  D      AA    P Y  ++     DN  KP   K P+DD
Sbjct: 304 DAGPDTNTINTAAKLSEPVYAKDIVPPPSDNLPKPQLLKRPIDD 347


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 244 VGRRRLDADADDCGDRLAAAPGAPEYQS 327
           +G++ +D DA   G  LAA  G P++ S
Sbjct: 121 LGKQAIDDDAHQTGGMLAAMLGWPQFTS 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,799
Number of Sequences: 5004
Number of extensions: 38703
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)