Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00654
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0076 + 28178354-28178610,28179504-28179600,28179720-281797...    30   2.0  
01_05_0520 + 22902554-22902661,22902848-22902968,22903288-22903922     29   3.5  
07_03_0803 - 21620754-21620955,21621718-21621780,21622172-216222...    29   4.6  
06_01_0603 - 4350124-4350590,4350995-4353608                           28   8.1  

>11_08_0076 +
           28178354-28178610,28179504-28179600,28179720-28179779,
           28180071-28180151
          Length = 164

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +1

Query: 223 RPHRALAVGRRRLDADADDCGDRLAAAPGAPEYQSNVDGMRDDNETKPLKRKEPVDDETS 402
           R  R++AVG++R +A A       AAA   PE +      ++D +      K+     + 
Sbjct: 18  RKTRSMAVGKQRAEAPAKAAKKEAAAAAAPPEQKGRKRAKKEDAQVAAAAEKDSGAVVSD 77

Query: 403 PKRQCPEIVID*CRALR 453
            KR    IV++ C   R
Sbjct: 78  GKR----IVVEACTQCR 90


>01_05_0520 + 22902554-22902661,22902848-22902968,22903288-22903922
          Length = 287

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +1

Query: 196 EQEAGGRRARPHRALAVGRRRLDADADDCGDRLAAAPGAPEYQSNVDGMR 345
           E  A   RA   RA   GR   DA+A     RLA    A   Q+ VDG+R
Sbjct: 136 ESRAAADRAVAERAARAGRAEADAEAA----RLAGVGAARHRQAVVDGLR 181


>07_03_0803 -
           21620754-21620955,21621718-21621780,21622172-21622250,
           21623312-21623424,21623500-21623798
          Length = 251

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 83  SLRITELDAQQQIKLFLIMGSPAEIVQLTRAIKARVQTSKKPAGGARGHIAPS 241
           +LR + L    Q++L + + SP     +  AI AR+  + KP+GG     A S
Sbjct: 178 ALRYSSLHNVNQLRLSMGLPSPMVETTVYLAITARLAVTAKPSGGGNPSPATS 230


>06_01_0603 - 4350124-4350590,4350995-4353608
          Length = 1026

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 473 VPPCQRERNARHQSITISGHCLFGEVSSSTGSFLFRGLVSLS-SRMPSTL 327
           +PP +  R  R + + +S + L GE+  S G     GLV LS +R+  T+
Sbjct: 347 IPP-EMSRLRRLERLYLSNNLLAGEIPRSIGEMPHLGLVDLSGNRLAGTI 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,099,297
Number of Sequences: 37544
Number of extensions: 302330
Number of successful extensions: 1181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)