Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00654
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    32   0.45 
U23510-9|AAC46781.1|  340|Caenorhabditis elegans Associated with...    31   0.78 
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      29   3.2  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    29   3.2  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    28   5.5  
U97010-2|AAB52319.1|  198|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 3   CAWRARCGSCSTPSCGPTCWPTRPDPSRC 89
           C   + CG  S   CG TC P+ P P  C
Sbjct: 60  CGGMSGCGCGSMGMCGQTCCPSAPPPCSC 88


>U23510-9|AAC46781.1|  340|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 5 protein.
          Length = 340

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/43 (32%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = +2

Query: 11  AGSLRVVLNTKLWPDMLADQTGPKSLRITELDAQ-QQIKLFLI 136
           +G+LRV++N+K++ DML ++   K +RI+ +  +   +++FL+
Sbjct: 201 SGTLRVIINSKIFSDMLLERV-DKRIRISAMGPEISGVQIFLL 242


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 314 PSTSPMSTACGTTTKPNP*KGKSQSTT 394
           PST+P ST   TTT P P    S ST+
Sbjct: 604 PSTTPTSTTTTTTTTPKPTTSTSTSTS 630


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 314 PSTSPMSTACGTTTKPNP*KGKSQSTT 394
           PST+P ST   TTT P P    S ST+
Sbjct: 604 PSTTPTSTTTTTTTTPKPTTSTSTSTS 630


>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 317 STSPMSTACGTTTKPNP*KGKSQSTTKP 400
           S SP+S+   TTT+P+P +  S+  T+P
Sbjct: 320 SASPISSKPATTTEPSPLQASSKPATEP 347


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 262  DADADDCGDRLAAAPGAPEYQSNVDGMRDDNETKPLKRKEPVDDETSPKRQCPEIVI 432
            D +ADD        P     Q   D       ++P  +KEP D++  P+R+  ++++
Sbjct: 1017 DDEADDSSPTADIKPSLQALQKPTDTSSQSTSSEPPPKKEPADEQ--PEREKEKLIL 1071


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 262  DADADDCGDRLAAAPGAPEYQSNVDGMRDDNETKPLKRKEPVDDETSPKRQCPEIVI 432
            D +ADD        P     Q   D       ++P  +KEP D++  P+R+  ++++
Sbjct: 1017 DDEADDSSPTADIKPSLQALQKPTDTSSQSTSSEPPPKKEPADEQ--PEREKEKLIL 1071


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 317 STSPMSTACGTTTKPNP*KGKSQSTTKPRRRDSAPK 424
           S SP S    TTT+P+P +  S+  T+P  R  + +
Sbjct: 320 SASPTSIKPSTTTEPSPLQASSKPATEPLLRPESTR 355


>U97010-2|AAB52319.1|  198|Caenorhabditis elegans Hypothetical
           protein W08A12.3 protein.
          Length = 198

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 333 RRHAGRQRNQTPEKERASRRRNLAEETVPRNSNRLMSRVTLALTRRYTNLVL 488
           R+ A R R  T +   + + R  +EET+  N+    S +  +    YT  VL
Sbjct: 110 RKSAERDRESTKKSSPSKKVRMESEETINTNTTNSQSTINASENGEYTGGVL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,608
Number of Sequences: 27780
Number of extensions: 239470
Number of successful extensions: 890
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)