Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00654
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 637 YLETTLAFKLSTNLWYFV 690
           Y   +L+FKL  N+ YFV
Sbjct: 228 YQRLSLSFKLQRNIGYFV 245



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 76  SGLVGQHVGPQLGVEHDPQR 17
           SGLV     P  G EHDP +
Sbjct: 387 SGLVSGSSTPGTGREHDPAK 406


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 671 VLSLNASVVSKYGHCISNNQ 612
           +L  N   + +  HC++NNQ
Sbjct: 400 ILGANVKELIRNTHCVNNNQ 419


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 317 STSPMSTACGTTTKPNP*KGKSQSTTKPR 403
           +T+  +T   TTT PN  +  S +T  P+
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNASATTPPPQ 692


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 14  GSLRVVLNTKLWPDMLADQTGPKSLRITELDAQQQIKLFLI 136
           GS+  + N  L P   A  T   S   +   +Q+ IK+F++
Sbjct: 368 GSIYFLGNYSLVPTTTASPTTEPSTTTSTTISQKHIKVFVV 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,267
Number of Sequences: 438
Number of extensions: 3109
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)