Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00653
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   2.0  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   6.0  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    24   6.0  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    24   7.9  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 135  LHYTYLQYIYNPYTLTVKIHSKNPSAFTLSVPHEGTSL*KYV 10
            L  TYL Y YN     +     NP ++T +V  +GTS   Y+
Sbjct: 1188 LSQTYLLYSYNSKVDNIS----NPGSWTSTVTVQGTSTGSYI 1225


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 265  CNISNK*FNEKSMYFHIKWKP*FLTMFTKNN 173
            C ISNK F    + F  +WK     +   NN
Sbjct: 1670 CPISNKIFTWNDLVFKQQWKEALTQLLLTNN 1700


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 105 NPYTLTVKIHSKNPSAFTL 49
           NP  L   I S+NPSA+TL
Sbjct: 532 NPDKLIKTIFSQNPSAYTL 550


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 268 ECNISNK*FNEKSMYFHIKWKP 203
           +C ++ +  N+   + H+KWKP
Sbjct: 23  KCLLTKEETNQLLKFIHLKWKP 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,935
Number of Sequences: 5004
Number of extensions: 21897
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)