Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00652
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 64 1e-10
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 35 0.082
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 2.3
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 5.4
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 7.1
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 9.4
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 9.4
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 64.1 bits (149), Expect = 1e-10
Identities = 37/85 (43%), Positives = 50/85 (58%)
Frame = +3
Query: 255 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILG 434
VDIV RL E F DKK + ++K Y+K L AKL+ ++ E FK N+ K +LG
Sbjct: 68 VDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLG 123
Query: 435 RFKELQFFTGESMDCDGMVAMMEYR 509
+ K+LQFF GESM DG + Y+
Sbjct: 124 KLKDLQFFVGESMHDDGGLVFAYYK 148
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 62 MKIYKDIITGDEMFSDTYKMKLVDE-VIYE*PVGW 163
M +Y+D++TGDE+ SD++ + ++ +++E W
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKW 35
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 34.7 bits (76), Expect = 0.082
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = -3
Query: 593 ISYLTFRISLLLDH-V*KTS*LVFAYHQSPIFHHGNHAITIHGLPSKEL----KFLKPAE 429
IS+LT +++ L++ + + H+ FHH H ++ PSK+L ++L+
Sbjct: 214 ISFLTDKVAQSLENFIQYHPRAIQEAHRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGR 273
Query: 428 DVFHYFVHVCFKYFNLVRRL 369
FH F ++C++Y + R+L
Sbjct: 274 -YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 300 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 473
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 474 D 476
+
Sbjct: 1195 E 1195
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 273 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 452
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 453 FFTGE 467
+ E
Sbjct: 237 VLSKE 241
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 375 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 277
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 166 TRAQGDIQIEGFNPSAEEADEGTDSAVES 252
TR+ +Q++GF PSA ++ +G+ + V S
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSS 855
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 512 SPIFHHGNHAITIHGLPSKELKFLKPAEDVFHYFVH 405
+P+ HHG+H H ++ + PA+ HY VH
Sbjct: 346 APMHHHGHHHHHHHHHGHEDSRHSAPAQAPVHYPVH 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,791,642
Number of Sequences: 37544
Number of extensions: 366249
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -