Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00651
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    31   0.24 
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    28   1.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   5.2  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.9  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    26   6.9  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   9.2  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 235 PWIPISPF*PGKPITPGLPGSPGKPCRPCAP 143
           P +P +PF PG P  P +PG PG    P AP
Sbjct: 533 PGMP-APF-PGYPAVPAMPGIPGATAPPGAP 561



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 253 PFWP--SGPWIPISPF*PGKPITPGLPGSPGKP 161
           PF P  S P  P +   PG P+ P +PG+PG P
Sbjct: 484 PFIPGTSAPLPPTTFAPPGVPLPP-IPGAPGMP 515



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 253 PFWPSGPWIPISPF*PGKPITPGLPGS 173
           PF P  P +P  P  PG    PG PGS
Sbjct: 538 PF-PGYPAVPAMPGIPGATAPPGAPGS 563


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -2

Query: 488 NLCHQFDP-IDQVIPVVLEGL--QILDLL*VLEDRQDLDVQ 375
           +LC    P +D+++P++L+G+    +DLL +  D  D DV+
Sbjct: 292 DLCSALGPYLDKIVPMLLQGMVYSDMDLLLLGNDADDYDVE 332


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 717 SNGSRESIKPTHPHFSFL 664
           SN S  S KP+HP  SFL
Sbjct: 805 SNNSSNSFKPSHPSQSFL 822


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 360 PGKPGYPNSPLSPFSPCEP 304
           P     PN+P +PFSP  P
Sbjct: 269 PSMKDVPNNPFTPFSPINP 287


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 760 PLDQVLLEDHDFLFLQWVPRVHQTHASPFLL 668
           PLD  +L+ H     QW   + + H   F L
Sbjct: 140 PLDYTILDHHSGTIAQWRDTIEEIHRRGFYL 170


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 103 PLGSQVFLDYPVRLEHKDDKVSLENLVGQVLLVCLVRKVIWES 231
           PLG Q+  ++ + + H     S+EN V + +L   +RK+I  S
Sbjct: 196 PLGLQLIKNFAIEICHAKPNWSMENFVDKEIL--RIRKMIGPS 236


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 290 DLEVQDVLENPETFLAIWPLDSHITFLTRQTNNTWPTRFSRETLSSL 150
           DLE +DV    +  +   P++SH T +T   +N      SRETL+ +
Sbjct: 243 DLENKDVEAESQEAVVAAPIESHDTEMTNVHDN-----ISRETLNGI 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,563
Number of Sequences: 5004
Number of extensions: 48379
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)