Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00651
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0145 + 1092764-1093351 34 0.11
07_01_0479 + 3606663-3607448 31 1.0
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 31 1.3
12_01_0264 - 1929022-1930212 29 5.4
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 29 5.4
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 7.2
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 28 9.5
11_01_0385 + 2915532-2916482 28 9.5
06_01_0080 + 644021-645463 28 9.5
04_04_1125 + 31085106-31085714 28 9.5
>06_01_0145 + 1092764-1093351
Length = 195
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 153 GRQGFPGEPGRPGVIGLPGQKGDMGIQGPDGQKGFR 260
G G PGEPG+PG G G+ G G G G+ G R
Sbjct: 16 GEPGQPGEPGQPGGRGRGGRGGRGGRGGAGGRLGVR 51
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 168 PGEPGRPGVIGLPGQKGDMGIQGPDGQKG 254
PGEPG+PG G PG +G G G G+ G
Sbjct: 15 PGEPGQPGEPGQPGGRGRGGRGGRGGRGG 43
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 174 EPGRPGVIGLPGQKGDMGIQGPDGQKG 254
+PG PG G PGQ G G G G+ G
Sbjct: 14 QPGEPGQPGEPGQPGGRGRGGRGGRGG 40
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = -3
Query: 253 PFWPSGPWIPISPF*PGKP------ITPGLPGSPGKPCRPCAP 143
P +P GP P PF G P + PG+PG P RP P
Sbjct: 195 PAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMP 237
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 256 KPFWPSGPWIPISPF*PGKPITPGLPGSPGKPCRP 152
+P P GP + P P P PG+P P P +P
Sbjct: 221 RPGMPGGPPPGMRPGMPPPPFRPGMPPPPPGPQQP 255
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = -3
Query: 253 PFWPSG-PWIPISPF*PG--KPI--TPGLPGSPGKPCRPCAP 143
P P G P +P +P PG PI PG+PG PG P P P
Sbjct: 92 PGMPLGVPQVPGAPLMPGVRPPILPAPGIPGYPGAPNVPTMP 133
>12_01_0264 - 1929022-1930212
Length = 396
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 248 LAIWPLDSHITFLTRQTNNTWPTRFSRETLSSLCSNLT 135
L ++P +H+ T QT NT P ETL ++ +T
Sbjct: 331 LEVFPTKAHVDLRTYQTENTSPLEAPEETLLAVKPEVT 368
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 309 HREKRVIKEN*GIQVYPVLQASLDVQVLSVLKDLKEIKDLKALQDYRDYLV 461
H +R + G + P + + Q L++LKD+ IK++ + RDYL+
Sbjct: 169 HFLRRFVLFTIGYILCPTTKPIVSSQYLALLKDIDNIKNINWARITRDYLI 219
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 144 GAQGRQGFPGEPGRPGVIGLPGQKGDMGIQGPDGQKGF 257
G GR+G G GR G +G GQ+ G G G F
Sbjct: 1056 GFIGREGPGGFGGREGPVGFGGQESPGGFGGRKGPGAF 1093
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 348 QVYPVLQASL-DVQVLSVLKDLKEIKDLKALQDYRDYLVYWVKLVTEV 488
+V PV+ +L D+ + S + +LKE+ + + YL YW ++++
Sbjct: 117 EVAPVISKNLEDILMSSGMLNLKELCLISGKASWLAYLAYWASPISQI 164
>11_01_0385 + 2915532-2916482
Length = 316
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = -3
Query: 253 PFWPS--GPWIPISPF*PGKPITPGLPGSPGKPCRPCAP 143
P WP W P+ PF P TP P PG P P
Sbjct: 236 PAWPQPGNKWPPLPPFPSHPPPTPAWP-HPGNQWPPLPP 273
>06_01_0080 + 644021-645463
Length = 480
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 357 PVLQASLDVQVLSVLKDLKEIKDLKALQ-DYRDYL-VYWVKLVTEVIRALKVTRGC 518
P ++ASLD + LS LKD + ++ K Q D+ L V +L+ +V +AL ++ C
Sbjct: 282 PTIEASLDSRFLSGLKD-ERVEAAKVFQGDFSSNLPVDKAQLIEDVRQALYASKIC 336
>04_04_1125 + 31085106-31085714
Length = 202
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = -3
Query: 235 PWIPISPF*PGKPITPGLPGSPGKPC-RPCAPT 140
PW P P P TP P +P P P PT
Sbjct: 77 PWTPTPATPPPTPATPATPTTPPTPAPAPSTPT 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,932
Number of Sequences: 37544
Number of extensions: 323910
Number of successful extensions: 1197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -