Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00650
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 73 3e-14
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 71 2e-13
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 69 6e-13
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 30 0.36
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 29 0.83
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 1.9
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 27 3.3
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 25 7.7
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 25 7.7
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +2
Query: 356 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYXAWGYPNLKSVRELV 508
+ RK++QL RL QINNGVFV+ NKAT ML++ EPY +G PNLK+VREL+
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELL 156
Score = 65.3 bits (152), Expect = 8e-12
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +1
Query: 472 GIPQLKECP*VSNKRGFAKLSGQRIPITSNSIVEKKLHKHNIICVEDLIHEIFTVGEN 645
GIP LK + KRGF K++ QRI ++ N+I+E L K++I+ +EDLIHEI+TVG N
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPN 202
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +3
Query: 282 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 383
GNYYVP E KL FVIRIRGIN + PK+ K L
Sbjct: 81 GNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +1
Query: 91 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEID 258
PES+LK + +++++ KK+ I KRAE Y EYR ER++I+
Sbjct: 17 PESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIE 72
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/51 (64%), Positives = 39/51 (76%)
Frame = +2
Query: 356 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYXAWGYPNLKSVRELV 508
++RKVL+L RL +INN VFVR NKA MLRI EPY +G PNL SVREL+
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELI 154
Score = 62.9 bits (146), Expect = 4e-11
Identities = 26/58 (44%), Positives = 42/58 (72%)
Frame = +1
Query: 472 GIPQLKECP*VSNKRGFAKLSGQRIPITSNSIVEKKLHKHNIICVEDLIHEIFTVGEN 645
GIP L + KRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG +
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSH 200
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 91 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 255
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ I
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERI 69
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 282 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 383
G+ +VP E KL FVIRI G+ + PK K L
Sbjct: 79 GDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 68.9 bits (161), Expect = 6e-13
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = +2
Query: 356 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYXAWGYPNLKSVRELV 508
+ RK++QL RL QINNG+FV+ NKA ML++ EPY +G PN K+VREL+
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELI 155
Score = 66.1 bits (154), Expect = 4e-12
Identities = 31/58 (53%), Positives = 42/58 (72%)
Frame = +1
Query: 472 GIPQLKECP*VSNKRGFAKLSGQRIPITSNSIVEKKLHKHNIICVEDLIHEIFTVGEN 645
GIP K + KRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI+TVG N
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPN 201
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +3
Query: 282 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 383
GNY+VP E KL FV+RIRGIN + PK+ K L
Sbjct: 80 GNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 91 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEID 258
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIE 71
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 645 IFSNSEDLMDEVLNTDNVVFMELLLNNAVGSDWYTLSTQLGESTFVTNSRTLFKLG 478
IF+ +D M L T+N + L+L +A W TL G + F S + LG
Sbjct: 322 IFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALG 375
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 553 TSNSIVEKKLHKHNIICVEDLIHEIFTVGENSSTRLFP 666
TS I+E++L +H I ++ +H + +N ++ LFP
Sbjct: 251 TSPPILEQRLKRHRIDVSDEDLHPSSQLNDNEASSLFP 288
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -1
Query: 632 VKISWMRSSTQIMLCL---WSFFSTMLLEVIGIRCPLSLANPRLLLTHGH-SLSWGIPKX 465
+K +++R + C+ WS+ MLLE++ LA L LT + + S GIP
Sbjct: 593 IKDNYIREHQRKTFCVGLNWSYTCEMLLEIVDCINDNGLAQIFLALTQDYKNSSSGIPDL 652
Query: 464 C 462
C
Sbjct: 653 C 653
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 279 DCVLVWLVYFITFLDAVFLDVLFS 208
+C++ L+ F+TF V LD +FS
Sbjct: 410 NCIISILILFLTFAGTVTLDAVFS 433
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 532 SGQRIPITSNSIVEKKLHKHNIICVEDLIHEIFTVGENSSTRL 660
+GQ +P T+ K+ K VE L + + G N+ +L
Sbjct: 44 NGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKL 86
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 532 SGQRIPITSNSIVEKKLHKHNIICVEDLIHEIFTVGENSSTRL 660
+GQ +P T+ K+ K VE L + + G N+ +L
Sbjct: 44 NGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKL 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,300
Number of Sequences: 5004
Number of extensions: 53190
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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