Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00650
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    81   1e-15
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    31   1.0  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   3.1  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   3.1  
AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    27   9.4  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
 Frame = +2

Query: 362 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYXAWGYPNLKSVRELVTNVDSPS*VDN 541
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY AWGYPN K++ +L+          N
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161

Query: 542 VYQSLPTALLRRSSINTTLSVLRTSSMR-SSLLEKIQVRDYFLWPFKL 682
                   ++ +S     +  L   +   +++    +    FLWPFKL
Sbjct: 162 RVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKL 209



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +1

Query: 472 GIPQLKECP*VSNKRGFAKLSGQRIPITSNSIVEKKLHKHNIICVEDLIHEIFTVG 639
           G P  K    +  KRG+AK+ G R+PIT N+IVE+ L K NIIC+EDL HEI TVG
Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVG 194



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +3

Query: 282 GNYYVPGEAKLAFVIRIRGINQVSPKSVK 368
           G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 75  GDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +1

Query: 76  KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 249
           K+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR  +++
Sbjct: 6   KVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 478 VSPSXVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 350
           ++PS  RL    H H+ L Q +++ I    Q K++Q F   GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 290  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 424
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 290  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 424
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 290  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 424
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.7 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 662 NNRVLEFSPTVKISWMRSSTQIMLCLWSFFSTMLLEVIGIRCPLSLAN 519
           N++ +  +  +K+ ++ SS  I +   S+F   +LE IGIRC  +  N
Sbjct: 150 NSQNIYKTKRIKMEYLESSDVISML--SYFKPRVLEEIGIRCLANFTN 195


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 172 SAIKKKREIFKRAEQYVKEYRIKERDEID 258
           S+I++K E  ++ +Q  KEYR+K   E++
Sbjct: 65  SSIEQKTEGSEKKQQLAKEYRVKVEQELN 93


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 461 YXAWGYPNLKSVRELVTNVDSPS*VDNVYQ--SLPTALLRRSSINTTLSVLRTSSMRSSL 634
           Y    + +  ++ +  T  D  S V ++ +  SL +  LR SS ++TLS L TSSM  ++
Sbjct: 494 YECGSWDSASNISQWSTYSDGHSSVQSLREQMSLSSYELRSSSGHSTLSSLSTSSMPDNM 553

Query: 635 LEKIQVRDY 661
            E I  ++Y
Sbjct: 554 SE-IPCKNY 561


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 172 SAIKKKREIFKRAEQYVKEYRIKERDEID 258
           S+I++K E  ++ +Q  KEYR+K   E++
Sbjct: 65  SSIEQKTEGSEKKQQLAKEYRVKVEQELN 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,320,248
Number of Sequences: 27780
Number of extensions: 291705
Number of successful extensions: 853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)