Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00649
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    29   0.76 
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    27   2.3  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   7.1  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   7.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   9.4  

>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 85  IDMRLCTSKPE---PSVVQLLLLCGTDAQT*XPEK--SELRILQKYFPLNSWIPKYSLK 246
           ID R  TS+P    PS   L     T  +   P++  S +R +  Y P+  W+P YSL+
Sbjct: 17  IDNRTSTSRPLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRINYYIPVLHWLPNYSLR 75


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 782 PSVSMSRPSLPVCNLTVPVAIASSTFLLQRSISSMVTNRP 663
           P VS  +PS+PV    +  ++     L++RS++S+  + P
Sbjct: 107 PDVSEKKPSMPVIQDPIDDSLEKEDGLIRRSMTSLCRHGP 146


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 600 RSQTVKLREVSLRNWLPPVAEFFNSF**VAQRSQ 499
           R    K+ E+  RNW PPV E+  S   +A++S+
Sbjct: 441 RDARKKIIEIHTRNWDPPVPEWLCSM--LAEKSK 472


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +1

Query: 568  AYFP-KLDSLTSSRG--WPPRQSGMQW--QDLNRAAEGLFVTIDEMERWRRNVE 714
            A+FP K+  + S++        SG Q   Q++    EG+ +  D M +WR NV+
Sbjct: 889  AHFPPKIIEMASNKAAELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 520 LKRVKKFSNWREPIPEAYFPKLDSLTSSRGWPPRQSGMQWQDLNRAAEGL 669
           L  +K  ++  + I     PKL + T+S  +PP +S  +  D N   E +
Sbjct: 92  LVTLKVSTSLGQKIENILHPKLSNDTNSTAFPPAKSSGEASDTNILVENI 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,402,673
Number of Sequences: 5004
Number of extensions: 71625
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)