Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00649
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    28   8.8  
AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical ...    28   8.8  
AF016678-2|AAB66153.1|  432|Caenorhabditis elegans Hypothetical ...    28   8.8  

>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical protein
            D2085.4 protein.
          Length = 1001

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 445  PTWGVVLLYAPASDSPLQLRALCNSLKRVKKFSN 546
            P  GV+++  P+SD  L   A C ++ R+ K+SN
Sbjct: 949  PRMGVLVI--PSSDDELPTSATCMNMLRIPKYSN 980


>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 226 IPKYSLKLVNRSCYSTRRSTHTYYHSTRLHCDGLRRRTPPCVLARRYRHQPASLSLAFGL 405
           IP+Y + + N   YST +   T  +       GL  +   C+ A     +   + L FGL
Sbjct: 187 IPRYIMLIQNLMNYSTEKDDMTNLYKALSGMQGLSDQIQSCMTAYENGERLLQIQLNFGL 246


>AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical
           protein Y52B11A.1 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 73  TRFAIDMRLCTSKPEPSVVQLLLL 144
           TRF I MR  TSK EP++ +LL L
Sbjct: 96  TRFIISMRDFTSKEEPTLSELLNL 119


>AF016678-2|AAB66153.1|  432|Caenorhabditis elegans Hypothetical
           protein K07E8.7 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -3

Query: 771 DVKAESARLQSNGTSRDSFFHVSSPAFHFVNGHK*TFGGTIQVLPLHTGLTWGPS 607
           D K+   +L S+GT      H+ +   H +  H    G  I    ++    WGP+
Sbjct: 268 DAKSRFRKLWSDGTQSVVQVHIETGRTHQIRVHSQFLGHPIAGDQIYNSAVWGPT 322



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +1

Query: 370 HQPASLSLAFGLPVYGQRSFNRS*-GPTWGVVLLYAPASDSPLQLRALCNSLKRVKKFSN 546
           HQ    S   G P+ G + +N +  GPT G    Y  + D       LC  ++   K  N
Sbjct: 295 HQIRVHSQFLGHPIAGDQIYNSAVWGPTKGKNADYQKSFDE------LCEDVRNTHKCEN 348

Query: 547 WRE-PIPE 567
           W E P PE
Sbjct: 349 WHEKPNPE 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,025,041
Number of Sequences: 27780
Number of extensions: 408304
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)