Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00648
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0338 + 7426999-7428322,7428390-7428646 28 3.5
05_03_0618 - 16262826-16263097,16263111-16263183 27 4.6
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981... 27 4.6
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 6.1
09_04_0269 + 16265191-16265472,16265574-16266149 27 6.1
12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973... 27 8.1
08_02_1290 - 25927667-25928950 27 8.1
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 27 8.1
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32... 27 8.1
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 27 8.1
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 27 8.1
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 149 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 9
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 34 RIARREQKLKEHGASSCISGKRGRRC 111
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>01_01_1215 +
9815918-9816218,9816772-9816912,9816988-9817106,
9817922-9818191,9818330-9818369,9818519-9818616,
9818745-9818825
Length = 349
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 154 SRARFQLSGNSGRKHSRCCTSILRKFSGRQHCVT-LTAAAMVAPTP*GD 297
S++ LS +GRK R C+ + +++ T LT+AA+V P P GD
Sbjct: 137 SQSIVSLSSFAGRKRIRVCSGFVIRWNDSTSIGTILTSAALVRP-PCGD 184
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 151 GSRARFQLSGNSGRKHSRCCTS 216
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 146 MESTDPQCHILQHRRPRLPL 87
M T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176
>12_02_0780 +
23094989-23095380,23096132-23096573,23096687-23097311,
23098240-23098280,23098371-23098439,23098779-23098879,
23099422-23099500,23099946-23100044,23100123-23100191,
23100283-23100332,23100416-23100497,23100997-23101091,
23101263-23101395
Length = 758
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 356 PNKTEKVRSWSDFENG*CLASPHGVGATMAAAV 258
PNK E SWS F N +S G+T ++A+
Sbjct: 428 PNKNEASGSWSSFNNN-STSSASSTGSTNSSAL 459
>08_02_1290 - 25927667-25928950
Length = 427
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 314 NG*CLASPHGVGATMAAAVNVTQCCRPLNFRSMLV--QQRLCFLPL 183
+G L +PH A A T+C P LV QRL +PL
Sbjct: 311 SGDLLVTPHSHSAAAAGVAITTRCLYPRRLAGRLVGAAQRLLHVPL 356
>07_03_1704 + 28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 347 TEKVRSWSDFENG*CLASPHG 285
T+KVR W DF CL SP G
Sbjct: 970 TQKVRRWHDFIILSCLRSPFG 990
>05_01_0046 +
320600-320631,320694-320733,320871-320957,321282-321378,
321532-321823,321850-321990,322285-322390
Length = 264
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +1
Query: 40 ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 204
A++ + E S G G + W+W D SGS + FQ S SR
Sbjct: 87 AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 130 GSVDSISGSRARFQLSGNSGRKHSRCCTSI-LRKFSGRQHCVTLT 261
GS DS+ G + R + N K C T I LRK SG +T
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSGNNDLSDVT 712
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 40 ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 153
A RE + ++G A + G R N W G DS+SG
Sbjct: 44 ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,840,082
Number of Sequences: 37544
Number of extensions: 209947
Number of successful extensions: 453
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -