Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00648
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.19
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 1.0
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 1.0
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 1.8
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 1.8
U13643-5|AAA21081.1| 89|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical ... 28 3.1
Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 9.5
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 79 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 183
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.5 bits (63), Expect = 1.0
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 64 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 234
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 235 GRQHC 249
GR HC
Sbjct: 1250 GR-HC 1253
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 61 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 240
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 241 QHC 249
+HC
Sbjct: 1195 EHC 1197
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.5 bits (63), Expect = 1.0
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 64 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 234
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 235 GRQHC 249
GR HC
Sbjct: 1250 GR-HC 1253
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 61 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 240
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 241 QHC 249
+HC
Sbjct: 1195 EHC 1197
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 344 EKVRSWSDFENG*CLASPHGVGATMAAAVN 255
E V SW+ F N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 344 EKVRSWSDFENG*CLASPHGVGATMAAAVN 255
E V SW+ F N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 344 EKVRSWSDFENG*CLASPHGVGATMAAAVN 255
E V SW+ F N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>U13643-5|AAA21081.1| 89|Caenorhabditis elegans Hypothetical
protein T07E3.2 protein.
Length = 89
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 336 DLFCFIWN*NAFKFLINLSMRCKKKKKK 419
DLF I+N F + L + CKKKK K
Sbjct: 4 DLFVIIFNFCIITFSVYLGIGCKKKKNK 31
>AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical
protein E03E2.1 protein.
Length = 506
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 341 KVRSWSDFENG*CLASPHGVGATMAAAVNVTQCCRPLNFRSMLVQQRLCFLP 186
K+ + EN + +P G N C RP F ++ QQR F+P
Sbjct: 387 KIGKYQFLENVQIVVNPWGPHHDREIWGNDVDCFRPSRFENLTEQQRKAFMP 438
>Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical
protein F44D12.2 protein.
Length = 342
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 128 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 30
+CH+ + PRLP ++ + C FC + A R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -1
Query: 149 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 60
L+E DP C ++ +++P++ +E +F
Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,106,795
Number of Sequences: 27780
Number of extensions: 169747
Number of successful extensions: 323
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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