Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00647X
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 151 4e-38
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 151 4e-38
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 46 3e-06
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 27 0.79
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 1.8
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 5.5
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 5.5
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 5.5
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 24 7.3
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 7.3
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 151 bits (366), Expect = 4e-38
Identities = 72/89 (80%), Positives = 79/89 (88%)
Frame = +1
Query: 1 IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKG 180
IV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG
Sbjct: 50 IVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKG 109
Query: 181 HAVGDIPGVRFKVVKVANVSLLAL*KRKR 267
A GDIPGVRFKVVKVA V L AL K+
Sbjct: 110 KAKGDIPGVRFKVVKVAGVGLSALFHEKK 138
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 151 bits (366), Expect = 4e-38
Identities = 72/89 (80%), Positives = 79/89 (88%)
Frame = +1
Query: 1 IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKG 180
IV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG
Sbjct: 50 IVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKG 109
Query: 181 HAVGDIPGVRFKVVKVANVSLLAL*KRKR 267
A GDIPGVRFKVVKVA V L AL K+
Sbjct: 110 KAKGDIPGVRFKVVKVAGVGLSALFHEKK 138
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 45.6 bits (103), Expect = 3e-06
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = +1
Query: 22 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 201
V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+ G GR D P
Sbjct: 61 VKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLLRG-GR----AQDCP 112
Query: 202 GVRFKVVK 225
GV++ VV+
Sbjct: 113 GVQYHVVR 120
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 27.5 bits (58), Expect = 0.79
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 388 FFLLYTIFIMY*DFTFYELINNALPDSRSLITMYTYDLGRSFFSF 254
FFL +TI +++ F ++P + LIT+ Y ++F+F
Sbjct: 199 FFLSFTILLVFTSPEFANTFIRSIPSNEGLITLSGYIKFWAYFTF 243
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 1.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 161 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 45
++S S F S+WFRQ + AVT+F MS HL A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 370 IFIMY*DFTFYELINNALPDSRSLITMYTYDLGRSFFSFRERGETR 233
IFI T + + + + D + L+ + Y+LG S++ F E T+
Sbjct: 863 IFIAAVAITCFTIHLSLVADDKLLLPVSWYNLGSSYYRFYECDTTK 908
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 212 KRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 111
K P + P P P+ AT+TSS +++ PSR
Sbjct: 395 KALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 109 PRDGCLNHIEENDEVLVAGFGRKGHAVG 192
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 383 FAVH-NIYYVLGFYIL*TYKQRASRQQVTYHNV 288
+ +H N ++ LGF L + R S ++V+Y N+
Sbjct: 221 YGMHWNFFFTLGFMALGVFFFRRSLKKVSYFNL 253
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 391 FFFLLYTIFIMY*DFTFYELINNALPDS 308
+ F +TIFI+Y + +Y + +A+ S
Sbjct: 147 WLFFGFTIFIIYRELRYYVIFRHAMQSS 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,367
Number of Sequences: 5004
Number of extensions: 28894
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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