Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00647X
(393 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 170 1e-42
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 170 1e-42
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 170 1e-42
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 104 9e-23
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 46 6e-05
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 46 6e-05
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 46 6e-05
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 46 6e-05
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 46 6e-05
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 46 6e-05
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 31 1.4
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 31 1.4
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 31 1.4
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 31 1.4
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 30 3.1
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 30 3.1
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 30 3.1
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 170 bits (414), Expect = 1e-42
Identities = 83/89 (93%), Positives = 85/89 (95%)
Frame = +1
Query: 1 IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKG 180
IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKG
Sbjct: 50 IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG 109
Query: 181 HAVGDIPGVRFKVVKVANVSLLAL*KRKR 267
HAVGDIPGVRFKVVKVANVSLLAL K K+
Sbjct: 110 HAVGDIPGVRFKVVKVANVSLLALYKGKK 138
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 170 bits (414), Expect = 1e-42
Identities = 83/89 (93%), Positives = 85/89 (95%)
Frame = +1
Query: 1 IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKG 180
IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKG
Sbjct: 50 IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG 109
Query: 181 HAVGDIPGVRFKVVKVANVSLLAL*KRKR 267
HAVGDIPGVRFKVVKVANVSLLAL K K+
Sbjct: 110 HAVGDIPGVRFKVVKVANVSLLALYKGKK 138
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 170 bits (414), Expect = 1e-42
Identities = 83/89 (93%), Positives = 85/89 (95%)
Frame = +1
Query: 1 IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKG 180
IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKG
Sbjct: 50 IVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG 109
Query: 181 HAVGDIPGVRFKVVKVANVSLLAL*KRKR 267
HAVGDIPGVRFKVVKVANVSLLAL K K+
Sbjct: 110 HAVGDIPGVRFKVVKVANVSLLALYKGKK 138
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 104 bits (250), Expect = 9e-23
Identities = 50/55 (90%), Positives = 51/55 (92%)
Frame = +1
Query: 103 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL*KRKR 267
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL K K+
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 55
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 45.6 bits (103), Expect = 6e-05
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +1
Query: 31 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 210
K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 211 FKVVK 225
VV+
Sbjct: 123 LTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 45.6 bits (103), Expect = 6e-05
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +1
Query: 31 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 210
K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 211 FKVVK 225
VV+
Sbjct: 123 LTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 45.6 bits (103), Expect = 6e-05
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +1
Query: 31 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 210
K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 211 FKVVK 225
VV+
Sbjct: 123 LTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 45.6 bits (103), Expect = 6e-05
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +1
Query: 31 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 210
K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 211 FKVVK 225
VV+
Sbjct: 123 LTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 45.6 bits (103), Expect = 6e-05
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +1
Query: 31 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 210
K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 211 FKVVK 225
VV+
Sbjct: 123 LTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 45.6 bits (103), Expect = 6e-05
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +1
Query: 31 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 210
K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 211 FKVVK 225
VV+
Sbjct: 123 LTVVR 127
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 158 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRT 3
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T
Sbjct: 547 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTT 600
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 158 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRT 3
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T
Sbjct: 547 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTT 600
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 158 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRT 3
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T
Sbjct: 207 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTT 260
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 158 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRT 3
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T
Sbjct: 207 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTT 260
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 158 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRT 3
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T
Sbjct: 231 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATT 284
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 158 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRT 3
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T
Sbjct: 208 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATT 261
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 158 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRT 3
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T
Sbjct: 208 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATT 261
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,726,318
Number of Sequences: 237096
Number of extensions: 1052029
Number of successful extensions: 1848
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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