Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00645
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 100 6e-22
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 31 0.71
12_01_0457 + 3601652-3601903,3603399-3603779 28 3.8
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543... 28 3.8
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 3.8
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614... 28 3.8
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 28 5.0
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 27 6.6
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 27 8.8
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 8.8
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 100 bits (240), Expect = 6e-22
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = +2
Query: 23 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDHDWFYVRCAAILRHI 202
TVKDV + VK +AHLK++GK+++PE +D+VKTARFKEL PYD DW+Y R A+I R I
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 203 YIRSPVGVKTVTKIFGG 253
Y+R +GV KI+GG
Sbjct: 68 YLRQGIGVGGFQKIYGG 84
Score = 65.3 bits (152), Expect = 3e-11
Identities = 26/52 (50%), Positives = 40/52 (76%)
Frame = +1
Query: 256 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 411
+RNG P HFC+SSG+I+R LQ L+ + +++ GGR++T+QGRRDLD++
Sbjct: 86 QRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 254 AHQRSW*QS*LQQVSECKYDEGWQHNAHRTNHGHTEPAL*SELSLQDPCAQV 99
A QR Q L VS EGWQH++ H + L E+ ++ AQV
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHENQNFLEMEVRVRSEMAQV 722
>12_01_0457 + 3601652-3601903,3603399-3603779
Length = 210
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 203 YIRSPVGVKTVTKIFGGPNVMELHLHISAG-----HQAVLHARLCNRW 331
Y+ S ++ ++FGG L LH+ G HQ V+ + +RW
Sbjct: 100 YVPSGTTGVSIMQVFGGGTATTLMLHVYGGDLWYYHQQVVETNIYDRW 147
>02_05_0726 -
31252210-31253166,31253667-31253840,31254320-31254364,
31254463-31254573,31254669-31254746,31255170-31255234,
31255358-31255733,31256891-31257035,31257308-31257462,
31259036-31259182
Length = 750
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 164 WFYVRCAAI-LRHIYIRSPVGVKTVTKIFGGPN 259
W Y R AA+ L IY+ PVGV + PN
Sbjct: 58 WLYSRSAAVVLVQIYLVDPVGVAAAQPLLALPN 90
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 130 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 8
S +YK+ +LRYLD + S S SFN+L+ L T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591
>01_06_1466 +
37559600-37559795,37560597-37560730,37561252-37561437,
37562538-37562753,37563008-37563119,37563493-37563663,
37564621-37564684,37565555-37565685,37566263-37566393,
37566843-37566945,37567322-37567398,37567813-37567860,
37568162-37568311,37568810-37569010
Length = 639
Score = 28.3 bits (60), Expect = 3.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 158 HDWFYVRCAAILRH 199
HDW + RCAA++ H
Sbjct: 497 HDWLFPRCAAVVHH 510
>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 41 QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDHDWFYVRCAAILRHIY 205
+D+I+ + ++ V+VP + +LV TA L P D W +R A LR +
Sbjct: 947 EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +2
Query: 8 KMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDHDWF 169
++ ++ V D +++ + + H K TG ++ E+ ++ L PY D F
Sbjct: 224 EVAALIVNDTSENQKGRDIIVHYKDTGPRRISENHPKFMAMQYPLLFPYGEDGF 277
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 74 LKKTGKVKVPEHMDLVKTARFKELAPYDHDWFYVRCAAILRHIYIRSPVGVK--TVTKIF 247
L + + ++PE + + A K HD ++ CA LR +++PV V+ TV
Sbjct: 51 LAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHER 110
Query: 248 GGPNVM 265
G P +
Sbjct: 111 GSPETL 116
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 367 HRPELSQQASMPPTIAKPCVQYCLMTCRN 281
H + + + P TIA+ +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,944,592
Number of Sequences: 37544
Number of extensions: 259114
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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