Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00645
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    95   3e-20
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    95   3e-20
Z81111-1|CAB03265.1|  349|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
 Frame = +2

Query: 14  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDHDWFYVRCAAIL 193
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP D DWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 194 RHIYIRSPVGVKTVTKIFGG---PNVMELHLHISAGH 295
           RH+Y R P G+    K++GG     V   H   SAG+
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
 Frame = +1

Query: 256 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 411
           KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 83  KRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
 Frame = +2

Query: 14  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDHDWFYVRCAAIL 193
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP D DWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 194 RHIYIRSPVGVKTVTKIFGG---PNVMELHLHISAGH 295
           RH+Y R P G+    K++GG     V   H   SAG+
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98



 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
 Frame = +1

Query: 256 KRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 411
           KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+DLDRI
Sbjct: 83  KRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135


>Z81111-1|CAB03265.1|  349|Caenorhabditis elegans Hypothetical
           protein T01G5.1 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 187 HPSSYLHSLTCWSQDCHQDLWWAKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG 366
           HP  Y    +CW+ D      ++K       HF  +   I +   Q  E LK  +  QD 
Sbjct: 282 HPDMYSFLSSCWNFDPEARPTYSKCVEFFDDHFSENQIMIGK---QITEKLKSAKNYQDK 338

Query: 367 GRILTTQGR 393
            +I T++ R
Sbjct: 339 LKIGTSENR 347


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -1

Query: 211 ANVNMTKDGSTTHIEPIMVIRSQLFEAS 128
           AN++ + +G TTH++ +M + S  F+++
Sbjct: 309 ANIDESNEGDTTHLKQLMQLLSAQFDSA 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,859,985
Number of Sequences: 27780
Number of extensions: 218634
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)