Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00644
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    83   5e-17
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.26 
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    28   1.4  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.4  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   4.3  
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    26   7.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   7.4  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   9.8  
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    25   9.8  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   9.8  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 38/58 (65%), Positives = 44/58 (75%)
 Frame = +1

Query: 589 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVP 762
           R+A YN KKA KP  + KS + LDVKPWDDET M  LE+AVRSI  DGL+WG +KLVP
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVP 168



 Score = 29.1 bits (62), Expect = 0.80
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 762 LAYGIHKLQISCVVEDDKV 818
           + +G++K QI+ VVEDDKV
Sbjct: 169 VGFGVNKFQINLVVEDDKV 187


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 320 TELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLES 439
           T+  +K+ S E ENK LK +ID+ +N + S    V+ + S
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSS 427



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 302  LAGVPNTELSTKVISLENENKDLKKAID----DLRNLVISLQVRVETLESSSSITSDCIQ 469
            LA      L+T+++ L+N+ KDL    D    DLR L  SL+  V +L+    I S+ ++
Sbjct: 1612 LAENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTL-RSLEDSVASLQKECKIKSNTVE 1670


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 317 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCI-QVQSEKPAA 493
           NT+LS K+   ENE +DL +    L++ ++ L+ R      +  +  +   ++Q+     
Sbjct: 36  NTQLSIKIRESENEIQDLIQENFTLKSYLVKLEARFRNQSQTEDLLKNFFPEIQTIHKKI 95

Query: 494 ASTDKMTKMMMLIC 535
           +    + K++   C
Sbjct: 96  SQVQSLLKIIEKKC 109


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 284 MDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSS 448
           M ++  ++G   T + +    +E+ENK L   + D+RN V  L+  +   E   S
Sbjct: 247 MQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFEDDYS 300


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 666 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 562
           LY+Q +       W+F    + C+ +LF   +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 697 LEQAVRSI-STDGLLWGAAKLVPWLMVSISCKFPVLL 804
           + QA+++I S  G+L     L+PW  +  S K  VLL
Sbjct: 47  MAQAIKAIMSRGGILGFYQGLIPWAWIEASTKGAVLL 83


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 6    VCSINFIYVKIQFNCMNQLFYCI*IQFKSKFWNNQHGCFI 125
            +C  N    +I  NCM QL      +F+ K WN     FI
Sbjct: 1517 ICRDNITLSRIGTNCMQQLLSGNAYRFEVKDWNLVADMFI 1556


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 329 STKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSS 445
           S ++  L+ EN+ L     DLR   I+L+ ++ET+++ +
Sbjct: 32  SIRIKELQLENERLLSENIDLRTTAINLEEQLETVQNEN 70


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 314 PNTELSTKVISLENENKDLKKAID 385
           PNTEL+  +  L    KDLK A++
Sbjct: 37  PNTELTYAIDELSETLKDLKAAVE 60


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 220 LDHHWPVKSQRLTAY*KFFRMYG*CSNFGGCS 315
           L  H+ +  +R+    KF +    C N+GG S
Sbjct: 130 LQEHYNITPERIAVLYKFAQFQYNCGNYGGAS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,602
Number of Sequences: 5004
Number of extensions: 52467
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)