Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00644
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 76 3e-14
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 75 9e-14
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 72 5e-13
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 31 1.5
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 30 1.9
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 29 4.5
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 29 5.9
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 29 5.9
09_03_0185 + 13206920-13207650,13208671-13208734,13208927-13208938 28 7.8
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 76.2 bits (179), Expect = 3e-14
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +1
Query: 589 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVP 762
R AA A KK KS+++LDVKPWDDETDMA LE+AVR++ +GLLWGA+KLVP
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVP 196
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 74.5 bits (175), Expect = 9e-14
Identities = 35/58 (60%), Positives = 43/58 (74%)
Frame = +1
Query: 589 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVP 762
R AA A KK KS+++LDVKPWDDETDM LE+AVR++ +GLLWGA+KLVP
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVP 180
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 72.1 bits (169), Expect = 5e-13
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +1
Query: 607 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVP 762
+K + K KS+++LDVKPWDDETDM LE+AVRS+ +GL WGA+KLVP
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVP 175
>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 323 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSS-SITSDCIQ 469
EL K+ ++E EN+ LK ++ ++ SLQ V LE + S+ +DC+Q
Sbjct: 1090 ELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQTLSLANDCLQ 1139
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 323 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSEKPAAA 496
ELS KV LE E DL++A+ D + ++ + +E +T D ++ +E+ AAA
Sbjct: 616 ELSAKVEQLEQELSDLRQALLDKQEQEQAMLQVLMRVEQEQKVTEDA-RIFAEQDAAA 672
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 317 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSE 481
N+E K+ SL+ EN+DL + RN ++ ++ ++T ++ T+ + +Q E
Sbjct: 1277 NSEYQQKIYSLQEENEDLTR-----RNQLMEKELDLKTSQNKDENTNKQVSLQDE 1326
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 344 SLENENKDLKKAIDDLRNLVISLQVRVETLESSSSI 451
SLE++ K+LK D+LR+ L+V ETLE I
Sbjct: 146 SLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKI 181
>05_07_0093 -
27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 257 QHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRN 397
+ ++ ++ M++ A + + ++ L NEN+ LK IDDL++
Sbjct: 421 EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKS 467
>09_03_0185 + 13206920-13207650,13208671-13208734,13208927-13208938
Length = 268
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Frame = +2
Query: 263 IKNSLECMDSVATLAGVPNTELSTKV-ISLENENKDLKKAIDDL----RNLVISLQVRVE 427
I+ LE MD G ++ KV +SLE+ + L++ I + R + +L +
Sbjct: 25 IQEKLEVMDKKLEKQGERLDQVQAKVDLSLESLGQVLQEQIHVMQAVKRTVPATLVIPTR 84
Query: 428 TLESSSSITSDCIQVQSEKP 487
T+E++SS+T + QV P
Sbjct: 85 TMEATSSVTREQPQVTIPMP 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,259,851
Number of Sequences: 37544
Number of extensions: 311765
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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