Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00643
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...   141   1e-34
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.3  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    27   4.1  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   9.4  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   9.4  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score =  141 bits (341), Expect = 1e-34
 Identities = 65/84 (77%), Positives = 71/84 (84%)
 Frame = +3

Query: 510 FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFE 689
           +GTASNIKSRVNRLSVL AITS + RLKLY KVP NGLVIYCG ++ E  K +K+NIDFE
Sbjct: 53  YGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFE 112

Query: 690 PFKPINTSLYLCDNKFHTEALTAL 761
           PFKPINTS YLCDNKFHTEAL  L
Sbjct: 113 PFKPINTSQYLCDNKFHTEALAEL 136



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = +1

Query: 349 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 510
           MSE  +A++ +EIWKI++L+K L    GNGTSMI+LIIPP +QISR S MLA++
Sbjct: 1   MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEE 52


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 621 LVIYCGTIVTEEGKEKKVNIDFEPFKPIN 707
           L ++    VT+EGKEK + I  E F+ I+
Sbjct: 619 LSLWTACCVTDEGKEKNIKIAVEIFREIS 647


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 430 GNGTSMISLIIPPKDQISRVSKMLADDLVQLLISSHV 540
           G G S+I+  I P D +  V K   +DLV+L +  ++
Sbjct: 856 GRGKSVIAEAIIPGDAVKSVLKTTVEDLVKLNVDKNL 892


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 328 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTS 444
           LN+  N +S    SSAD  +E W   K I S + +R   TS
Sbjct: 10  LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS 50


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 348 FVSLFI*LINHKHYIC-INN*NNVF-AQHQN 262
           F + F+ L +HK+YIC + N NN++  QH +
Sbjct: 197 FSTKFVALSSHKNYICGLTNDNNLYILQHSH 227


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 791 YMNQTCYHQPQCC 753
           Y+ QTC H PQ C
Sbjct: 341 YLEQTCVHLPQTC 353


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 579 QHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 713
           Q  + L   +   G+ +   T+V   G     NID+  ++P N S
Sbjct: 120 QDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQS 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,682
Number of Sequences: 5004
Number of extensions: 63600
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)