Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00643
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1085 - 23851852-23853165 151 5e-37
03_05_0830 + 28034179-28035492 151 5e-37
01_07_0127 + 41234826-41236136 149 3e-36
04_03_0691 - 18756812-18756883,18757453-18757590,18758017-187583... 34 0.15
02_05_0629 + 30475493-30475674,30477091-30477125,30477566-304777... 32 0.60
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 30 1.8
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 30 2.4
10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907 29 5.6
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 28 7.4
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 28 9.8
01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773 28 9.8
>07_03_1085 - 23851852-23853165
Length = 437
Score = 151 bits (367), Expect = 5e-37
Identities = 73/90 (81%), Positives = 77/90 (85%)
Frame = +3
Query: 492 KDVG**FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKK 671
K +G +GTASNIKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GTIVTE+GKEKK
Sbjct: 49 KMLGDEYGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKK 108
Query: 672 VNIDFEPFKPINTSLYLCDNKFHTEALTAL 761
V IDFEPFKPIN SLYLCDNKFHTEAL L
Sbjct: 109 VTIDFEPFKPINVSLYLCDNKFHTEALNEL 138
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/54 (74%), Positives = 48/54 (88%)
Frame = +1
Query: 349 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 510
MS+ DRN+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQI+RV+KML D+
Sbjct: 1 MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDE 54
>03_05_0830 + 28034179-28035492
Length = 437
Score = 151 bits (367), Expect = 5e-37
Identities = 73/90 (81%), Positives = 77/90 (85%)
Frame = +3
Query: 492 KDVG**FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKK 671
K +G +GTASNIKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GTIVTE+GKEKK
Sbjct: 49 KMLGDEYGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKK 108
Query: 672 VNIDFEPFKPINTSLYLCDNKFHTEALTAL 761
V IDFEPFKPIN SLYLCDNKFHTEAL L
Sbjct: 109 VTIDFEPFKPINASLYLCDNKFHTEALNEL 138
Score = 89.0 bits (211), Expect = 4e-18
Identities = 39/54 (72%), Positives = 48/54 (88%)
Frame = +1
Query: 349 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 510
MS+ D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQ+SRV+KML D+
Sbjct: 1 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDE 54
>01_07_0127 + 41234826-41236136
Length = 436
Score = 149 bits (360), Expect = 3e-36
Identities = 70/90 (77%), Positives = 77/90 (85%)
Frame = +3
Query: 492 KDVG**FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKK 671
K +G +GTASNIKSRVNR SVL AITS Q RLKLY +VPPNGLV+Y GTIVT+EGKEKK
Sbjct: 49 KMLGDEYGTASNIKSRVNRQSVLAAITSAQQRLKLYNRVPPNGLVLYTGTIVTDEGKEKK 108
Query: 672 VNIDFEPFKPINTSLYLCDNKFHTEALTAL 761
V +DFEPF+PIN SLYLCDNKFHTEAL L
Sbjct: 109 VTVDFEPFRPINASLYLCDNKFHTEALNEL 138
Score = 86.2 bits (204), Expect = 3e-17
Identities = 36/54 (66%), Positives = 47/54 (87%)
Frame = +1
Query: 349 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 510
M++ D+N+EIWK+KKLIK L+ ARGNGTSMISLI+PP+DQ+SRV+KML D+
Sbjct: 1 MADSHETDKNIEIWKVKKLIKGLDAARGNGTSMISLIMPPRDQVSRVTKMLGDE 54
>04_03_0691 -
18756812-18756883,18757453-18757590,18758017-18758308,
18758485-18758648,18759159-18759434,18759512-18759718,
18760303-18760475,18761978-18762139,18762561-18762720
Length = 547
Score = 33.9 bits (74), Expect = 0.15
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Frame = +3
Query: 390 EDKETYKEFGNGQRKWNIDDIPDHST*GSNLE---SIKDVG**FGTASNIKSRVNRLSVL 560
ED+ K F R+ + +P T G+ SI+DV TA NI ++
Sbjct: 329 EDQPVLKAF-QLMREKGVGGLPVMDTSGTKAIGNISIRDVQYLL-TAPNIYKDYRTITAK 386
Query: 561 GAITSV-QHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKF 737
+T+V QH + + P G VI C +E K+ + +D E I Y+ D+K
Sbjct: 387 DFLTAVRQHLQEQHEASPLLGSVITCRR--DDEVKDIILKLDSEKIHRI----YVIDDKG 440
Query: 738 HTEALTALRLMVTSLVH 788
+TE + LR +++ LVH
Sbjct: 441 NTEGVITLRDIISKLVH 457
>02_05_0629 +
30475493-30475674,30477091-30477125,30477566-30477724,
30478558-30478568,30479669-30479730,30480166-30480265,
30480495-30480770
Length = 274
Score = 31.9 bits (69), Expect = 0.60
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 579 QHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNK---FHTEA 749
Q +L+LY KV L+ C ++T K+ K +DF F+P+N + K HT A
Sbjct: 203 QQKLELYNKVRCKILLETCDYMLTHYPKQLKEQLDFS-FRPVNREVPQMQMKVPALHT-A 260
Query: 750 LTALRLMVTSLV 785
+ ++++ LV
Sbjct: 261 FVSYKMLICLLV 272
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 298 YTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLE 420
Y + ++N L+KK +M E+ D + EI +KKL+K +E
Sbjct: 347 YAELYQIINDLSKKTEEM-EKMKVDSDQEILLLKKLVKVME 386
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 382 EIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADDLVQL 522
E+ +++KL+ S+E+ GNG M++ +D +S V+ L D V L
Sbjct: 1125 EVKELEKLVDSIEVDIGNGGKMMA---SDEDPVSEVNSKLRDAAVSL 1168
>10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907
Length = 159
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 370 DRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 510
+R++E+W+I K ++ A+ TS ISL+ +++RVS D+
Sbjct: 93 ERDLEVWRISKEVQVNMEAQTKSTSRISLL----GEVNRVSTRTVDN 135
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 464 HLRIKSREYQRCWLMIWYSF*YQVTC 541
H R+ +R+++ W+ +WYS Y+ C
Sbjct: 275 HARLHARKFEHHWVGLWYSDPYKGYC 300
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 274 CKDIILVIYTNIVFVVN*LNKKRNKMSEESSADR 375
C+D+ L+I +NI + L + R + EE+ ADR
Sbjct: 515 CEDLRLIIQSNIYNYLGILLEGRERFEEEAIADR 548
>01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773
Length = 150
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 698 AYQHISLSLRQQVPHRGSNSTAADGNKFGSC 790
AY H+ + RGS AA G+ +G C
Sbjct: 73 AYDHLPRTATSPPTSRGSGGAAASGSSYGRC 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,979,448
Number of Sequences: 37544
Number of extensions: 381794
Number of successful extensions: 935
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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