Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00643
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical...   161   5e-40
J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    31   0.71 
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    31   0.71 
AL132848-3|CAB60386.1|  327|Caenorhabditis elegans Hypothetical ...    31   1.2  
AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    30   2.2  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    28   6.7  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    28   8.8  

>AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical
           protein T05H4.6 protein.
          Length = 443

 Score =  161 bits (391), Expect = 5e-40
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +3

Query: 510 FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFE 689
           +GTASNIKSRVNRLSVLGAITSVQ RLKLY KVPPNGLV+YCGTI+T+EGKEKKVNIDFE
Sbjct: 64  YGTASNIKSRVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFE 123

Query: 690 PFKPINTSLYLCDNKFHTEALTAL 761
           PFK INTSLYLCDNKFHTEAL  L
Sbjct: 124 PFKAINTSLYLCDNKFHTEALQGL 147



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/51 (74%), Positives = 49/51 (96%)
 Frame = +1

Query: 358 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 510
           + +ADRNVE+WKIK+LIKSLE+ARGNGTSMISLIIPPKDQ++R+ +MLA++
Sbjct: 13  DDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEE 63


>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 391 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 501
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALI 111


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 391 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 501
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALI 111


>AL132848-3|CAB60386.1|  327|Caenorhabditis elegans Hypothetical
           protein Y47H10A.4 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 133 RRRKCKL--ESVXGVARCLVRPVQTRLGQFETGIRAPFP*YSLFKVLVLCKDII 288
           + + CK   +SV G A  L+  + +R GQ+ T     +P YSL+KV  L +D I
Sbjct: 196 KEKSCKFYWQSVFGNAPVLI--IGSRSGQYSTQTTNNYPPYSLYKVEELKRDRI 247


>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 160 HFLVYIYVCGCSDLSSCAGILGFFLI 83
           HFL+      CS++++C  I+ FF++
Sbjct: 79  HFLIVYLALPCSNIAACRSIIAFFIV 104


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 331 NKKRNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLI 459
           NKKR++ S+++   +N EI  +KK + SL  ++    +M S I
Sbjct: 124 NKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKI 166


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 387 MEDKETYKEFGNGQRKWNIDDIPDHST*GSNLESIKDVG 503
           M DK T +  GN    ++ + +        N ES+KD+G
Sbjct: 476 MNDKNTVQRLGNAWAVFDFEGVTQLRDFAKNYESLKDIG 514


>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 112 KKTSPSNRRRKCKLESVXGVARCLVRPVQTRLGQFETGIRAPFP*YSLFKVLVLCKDIIL 291
           +K +  NRR+K + E+  G +     P Q  L   +      F  Y+    L LC  + L
Sbjct: 56  EKMNQRNRRKKREDEAAEGFSLPKSSPFQLNLYPVDVKDLVQFEMYTSLHWLCLCIPVCL 115

Query: 292 VIYT 303
            +YT
Sbjct: 116 FVYT 119


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 14  FVQRHLLFL*CLNFVFHMLRG----NRNKKKSKNPRT 112
           F+   L+FL C N VF++L G    N  KK  K P T
Sbjct: 184 FLMPALIFLTCFNIVFNVLAGIRLYNMKKKGVKVPET 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,842,959
Number of Sequences: 27780
Number of extensions: 359237
Number of successful extensions: 967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)