Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00643
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 648 TEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALRLMVTSL 782
           T  GKEK     + P    ++  +L   +FH+ A +   L  +SL
Sbjct: 380 TVRGKEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSL 424


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 648 TEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALRLMVTSL 782
           T  GKEK     + P    ++  +L   +FH+ A +   L  +SL
Sbjct: 380 TVRGKEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSL 424


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 573 SVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNK 734
           +  H+LK    V P+ + +   T     G    V++  +   P+NT +Y+ D+K
Sbjct: 164 NTSHQLKQV--VMPHDIAVNAST-----GNGGLVSLVVQAMDPVNTIVYMADDK 210


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 101 SWIFSYFGYP*ACGTQNSDITGIKDDV 21
           +W  +    P  C T+N D T I  D+
Sbjct: 13  TWELNATNSPHTCRTKNGDYTKIMPDI 39


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 629 YN*AVWWHFSIQLESVLYRSNCA 561
           YN AVW  F++  +  LY  + A
Sbjct: 123 YNTAVWARFNVNEQMYLYALSVA 145


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 629 YN*AVWWHFSIQLESVLYRSNCA 561
           YN AVW  F++  +  LY  + A
Sbjct: 123 YNTAVWARFNVNEQMYLYALSVA 145


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 372 IGRRFFRHFVSLFI*LINHKHYICINN*NNVF 277
           +G++   HF  L   LI  K +  +N  NN+F
Sbjct: 239 VGKKI-THFFDLVRPLIAFKFHSILNRTNNIF 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,520
Number of Sequences: 438
Number of extensions: 4155
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)