Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00641X
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 57 2e-09
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 35 0.009
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 27 1.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 2.4
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 3.2
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 26 3.2
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 26 3.2
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 26 4.2
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 25 5.5
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 25 7.3
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 25 7.3
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 7.3
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 9.6
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.6
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 56.8 bits (131), Expect = 2e-09
Identities = 31/83 (37%), Positives = 39/83 (46%)
Frame = +2
Query: 5 ICKPKXXXXXXXXXXXXXXXSLVGQIAKIKGCRVIGFAGTDDKVKWLEEELGFDKAFNYK 184
I KPK + GQ+AK G V+G G+D+K K + G+D FNYK
Sbjct: 155 IGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYK 213
Query: 185 TVDVPAALKEAAPNGIDCYFDNV 253
AL P GID YF+NV
Sbjct: 214 KESPFKALPRLCPKGIDIYFENV 236
Score = 41.1 bits (92), Expect = 1e-04
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 217 CP*RDRLLFRQCRGEISSQIISKMNVYGRVSVCGSISAYNEDLTKLPKATILQPSLVFNQ 396
CP + F GE ++ MN+ GR+ CG+IS YN P ++
Sbjct: 225 CPKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQYN---NPNPYRVKNLGMVLVKS 281
Query: 397 IKVEGFLVWRW--NAQSKAFAEIIPWIQSGKLKVK 495
+ ++GF+V Q + F E+ I GK+K K
Sbjct: 282 LTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYK 316
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 34.7 bits (76), Expect = 0.009
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 GQIAKIKGC-RVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDC 238
G+ A+I G +VIG ++++ ++ GF + DVP + E NG+DC
Sbjct: 238 GRWAQILGASKVIGIEVVPERIELARQKFGFTVIDRNEVSDVPKKIMELVSNGVDC 293
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 318 ATDGDPPVNVHFANYLTADFTATLSK*QS 232
ATD DPP+ +H ++ D T L + +S
Sbjct: 211 ATDKDPPLYLHIVSHNRKDLTVALQEIES 239
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 113 FAGTDDKVKWLEEEL 157
F+ +DD+V WLEE+L
Sbjct: 542 FSNSDDRVAWLEEQL 556
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 340 DLTKLPKATI-LQPSLVFNQIKVEGFLVWR 426
+ TKL K+ I +LVF I V GF+ WR
Sbjct: 292 NFTKLEKSIIGAFAALVFKDIFVYGFIAWR 321
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 535 KSIKEFIESSVTCPLLSISHSESKE 461
KS+ F+ SS+TC +S+ E E
Sbjct: 13 KSVSPFLRSSITCRRISMGRKELSE 37
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 98 CRVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDN 250
CR I G D W+++ G + K +++ A + G CY DN
Sbjct: 357 CRTIFMYGDKD---WMDDVAGLEATNRLKEMNIEAEHHIISNAGHHCYLDN 404
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 250 CRGEISSQIISKMNVYGRVSVCGSISAYNEDLTKLPKATILQPSL 384
C+ EI Q + K+N C S+++ N+ LT +A L SL
Sbjct: 46 CQNEIQPQGLEKLNADSSNFYCNSLTS-NQSLTTSMEALDLSSSL 89
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 522 SLSNPP*HVLYFQFPTLNPRNDFCKRLRLSIPAPNEKTFDFDL 394
SLSN H+ +Q T N FC RL+ S +EKT + L
Sbjct: 217 SLSNYQQHL--YQVLTQNVSLRFCSRLQCSFHKYDEKTKQYSL 257
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 125 DDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGI 232
DD K E ELGFD+ FN ++D P+ + + A I
Sbjct: 191 DDFAK--ELELGFDQEFN--SIDDPSTVSQTASKPI 222
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 416 RKPSTLIWLNTKLGCRIVALGNLVRSSLYALMLPQTET 303
RKP I L+TKLG +++ LVR + LML T
Sbjct: 168 RKPIKGIQLSTKLGTKLLVKNVLVRRGV--LMLDPNNT 203
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 434 LSRRRLQKSFLGFRVGN*K*RTCHGGFDKLF 526
L R+ + ++G ++GN +C GG D F
Sbjct: 412 LEENRIVRQYMGHKLGNFLIGSCFGGKDDTF 442
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 280 SKMNVYGRVSVCGSISAYNEDLTKLP 357
S N VS+CGS+ E LTK P
Sbjct: 491 SFQNANQTVSICGSLPEPAEKLTKAP 516
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 514 ESSVTCPLLSISHSESKE*FLQTPSTEH 431
ESSV+ P+ +I H K F Q EH
Sbjct: 577 ESSVSNPVATIPHENGKHDFGQLSPIEH 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,737
Number of Sequences: 5004
Number of extensions: 37126
Number of successful extensions: 117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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