Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00641X
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.22 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 92  KGCRVIGFAGTDDKVKWLEEEL 157
           KG +VIG A   DK+K L EEL
Sbjct: 30  KGMKVIGIAPQVDKMKTLVEEL 51


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 327 AYAATDGDPPVNVHFANYLTADFTATL 247
           +Y ++ GD PV+ H +N +   F  ++
Sbjct: 66  SYDSSSGDSPVSSHSSNGIHTGFGGSI 92


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 427  WNAQSKAFAEIIPWIQSGKLKVKDMS 504
            W+ + K   E+  W+     KV D S
Sbjct: 926  WSCRCKFLQELSSWVSDNAHKVVDAS 951


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 484 ISHSESKE*FLQTPSTEHSSA 422
           IS   S   F Q+PS  HSSA
Sbjct: 622 ISQDGSSPHFHQSPSQNHSSA 642


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,845
Number of Sequences: 438
Number of extensions: 2512
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)