Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00640
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    29   0.51 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    29   0.68 
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    28   1.6  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    27   3.6  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   4.8  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    26   4.8  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   8.3  

>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 513 GWVMLLIRENYGYFLNRLFHM-DSADMIPAAVKTNKDPVVDSVQNALQVLTLEFAHNAKP 337
           G  + L  E YG  L R+    +++++  AAV     P+V  ++NA +       HNA P
Sbjct: 128 GLELALFYEEYGSLLIRMQRWKEASEVFHAAVSREARPLVRLLRNAAEFSRAYDLHNAHP 187

Query: 336 HDAAIPAAVP 307
                P + P
Sbjct: 188 SIHDAPYSSP 197


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 456 ETNGSENSRNSHVSIASPSLYLPRATVLKHTQGYPVLYPNMPPI 587
           +TNGS +S +S+   +SP             Q  PVL P +PPI
Sbjct: 416 DTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPPVLLPTLPPI 459


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +2

Query: 167 NQGIHFPHHRI*FANRHSRYPHLP----LLKR--HQSVPRKTTIRCPTSGSRP 307
           N  I  P  ++   + H+RY HLP    L K+  H S  RK + R   S  +P
Sbjct: 234 NSDIVTPDKQLDVVSEHARYKHLPFTATLRKKSPHDSTSRKASFRFVQSDQQP 286


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 308 GTAAGIAASCGFALCANSNVKTCRAFCTES----TTGSLFVFTAAGII 439
           GTA G+AAS    L   S V   RA  T S     +G+LF+F  AGI+
Sbjct: 495 GTAVGLAASANRILGIFSPVIAMRANLTTSAPIFVSGALFIF--AGIL 540


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
 Frame = -1

Query: 555  NLAYV*GLLREVSTGWVMLLIRENYGYFLNRLFHMDSADMIPAAVKTNKDPVVDSVQNAL 376
            N   V  LL E  TG +  L+ E Y   L R FH    + +       KDP  +  +N  
Sbjct: 969  NRGVVYHLLEENETGKLDELVLEEYADQLEREFHQKKRNTLEKIRLELKDPYGEQ-RNVF 1027

Query: 375  QVLT----LEFAHNAKPHDAAIPAAVPGRLPLVGQRMVVLR 265
              LT            P +    A VP  +  V  R V ++
Sbjct: 1028 HKLTPSEIFLMLTGENPEELQADAIVPVNVRRVTNRFVAVK 1068


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 494 INSITQPVLTSRNSPQTYARLSSSVPQHAANRLREVPCIALLHNVMLCQC 643
           INS+ Q + T     + + +   ++  + +   + V  I + H V+LCQC
Sbjct: 76  INSMRQYLATINKKLRAFVQTFLAIGGYYSITTQIVKIILITHPVLLCQC 125


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 558 PVLYPNMPPIVYAKCRA*LSCTTLCCV 638
           P L  N P ++ A+C + L  +++CC+
Sbjct: 28  PSLNRNDPKVITARCISVLLASSVCCI 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,749
Number of Sequences: 5004
Number of extensions: 50048
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)