Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00640
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909...    31   0.93 
02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798...    29   2.8  
02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528...    29   2.8  
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487...    29   3.8  
05_07_0263 + 28775769-28777109                                         28   8.7  

>11_04_0258 +
           15489733-15490054,15490150-15490339,15490438-15490910,
           15501203-15501513
          Length = 431

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 215 HSRYPHLPLLKRHQSVPRKTTIRCPTSGSRPGTAAGIAASCGFAL 349
           H    H  L KRH + P  + +  P  GS   TAAG A +   A+
Sbjct: 259 HPSTQHTALTKRHSTPPASSDVDRPIGGSALATAAGSADALQMAV 303


>02_04_0035 +
           19078267-19078479,19078588-19078674,19079792-19079863,
           19080338-19080526,19080599-19080718,19081348-19081430,
           19081518-19081773,19081878-19082199,19086355-19086548,
           19087135-19087227,19089327-19089497,19089580-19089699,
           19090303-19090373,19090608-19090675,19091097-19091191
          Length = 717

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 522 PRATVLKHTQGYPVLYPNMPPIVYAKCRA*LSCTTLCCV 638
           PR T+L+    Y ++YP  P +++ + +   +    CC+
Sbjct: 390 PRVTLLRMDSQYDIVYPLSPELIHQRAKRGGASRFYCCI 428


>02_01_0707 -
           5276963-5278396,5280163-5280248,5280634-5281011,
           5281453-5281690,5281787-5282052,5282148-5282526
          Length = 926

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 206 ANRHSRYPHLPLLKRHQSVPRKTTIRCPTSGSRPGTAAGIAAS 334
           AN+  R+PH P +    SV      +   +G+   TA G AAS
Sbjct: 342 ANQELRFPHFPAIDGLYSVGIPLPAQLAAAGAATATAGGAAAS 384


>03_06_0042 +
           31247084-31247641,31248396-31248482,31248684-31248779,
           31248897-31248998,31249455-31249541,31249692-31249759,
           31249879-31249963
          Length = 360

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +3

Query: 465 GSENSRNSHVSIASPSLYLPRATVLKHTQGYPVLYPNMPPIVYAKCR-------A*LSCT 623
           G  +  ++  ++AS ++ +  ++  +     P++ P + P   A  R       A  +C+
Sbjct: 111 GGVSRAHAPAAVASGAVVVDNSSAFRMDPEVPLVIPEVNPEAMAHVRLGKGAIVANPNCS 170

Query: 624 TLCCVNAATRSHNDAFTIHIPNTLYKA 704
           T+ C+ AAT  H  A  + +  + Y+A
Sbjct: 171 TIICLMAATPLHRHAKVVRMVVSTYQA 197


>05_07_0263 + 28775769-28777109
          Length = 446

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 432 PAAVKTNKDPVVDSVQNALQVL-TLEFAHNAKP 337
           PAA+ TN+  V D V  ALQ L +LE +  A+P
Sbjct: 133 PAAIPTNQSVVADHVLAALQSLYSLEPSFRARP 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,463
Number of Sequences: 37544
Number of extensions: 356897
Number of successful extensions: 1092
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)