Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00639
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.65 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.5  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   3.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 170 MKKLVAKLEEKAPDQVEVFKTNMNKVMKASSAGLRNFSSLL 292
           M+K+   L     DQ E   T   +VMK ++    NFSSLL
Sbjct: 245 MEKIYVALVWGVKDQAEF--TLSGQVMKYAALATENFSSLL 283


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 471 LFINHVRILAGTGSLITRLNNFVF*KNIL 557
           LF++H+R   G G++ +   NF+  KN L
Sbjct: 648 LFVDHIRQCVGGGTIGSNQRNFL--KNAL 674


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 557 QYIFLKYKIVQPCDERTSSCQDADMIDK*IKK 462
           Q +FL YK+++   ER+   Q+  M  + I+K
Sbjct: 304 QTVFLCYKLMEKFPERSHEQQELYMAAQVIEK 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,248
Number of Sequences: 336
Number of extensions: 2797
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)