Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00639
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    69   5e-13
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.39 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.52 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   3.7  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.8  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.8  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   6.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   8.5  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    25   8.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 38/96 (39%), Positives = 59/96 (61%)
 Frame = +2

Query: 8   GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 187
           GD+ I G NPSAE+A+E  +   E+  ++V + RL  T +F DKKSY  Y+K YMK + A
Sbjct: 41  GDVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKA 97

Query: 188 KLEEKAPDQVEVFKTNMNKVMKASSAGLRNFSSLLG 295
           +L+E  P++V VF+ N    +K   A  +++   +G
Sbjct: 98  RLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIG 133



 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 28/52 (53%), Positives = 34/52 (65%)
 Frame = +1

Query: 250 ESILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 405
           + IL  FK+  F+ GESMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 119 KKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 86  VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 232
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 446 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 333
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 457  FCFFIYLSIMSASW-QELVLSSQG*TIL 537
            +CF + L ++SA W  E+V S QG  +L
Sbjct: 1395 WCFSVQLQLLSADWPNEIVESVQGRLVL 1422


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 361 VFAYHQSLYIPSWQPC-HHN 305
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 106 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 8
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 215 VEVFKTNMNKVMKASSAGLR-NFSSLLGSPWIVMAWLP*WNIE 340
           VE    N N +  A  AGL+ +F + +  P +V ++LP WN E
Sbjct: 124 VEGLDANDNGI-SAYPAGLKPSFKAAMSLPEMVSSFLPAWNSE 165


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = -3

Query: 580 VNYFIVVCSIFF*NTKLFSLVMREPVPARMRT*LXXXXXXXXXKAPVWNY*VISYLTFRI 401
           +NY ++   +FF    L  + +  PV     T            A  WNY +  ++TF +
Sbjct: 113 INYSLIGIMMFFIVYALGEMAVAYPVAGGFNTYATRFIDPAWGFAVSWNYFINYFVTFPL 172

Query: 400 SL 395
            L
Sbjct: 173 EL 174


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 173 KKLVAKLEEKAPDQVEVFKTNMNKVMKASSAGLR---NFSSLLGS 298
           ++  A++E+    + E F+  MN V+K     ++   NF  +LGS
Sbjct: 710 EQFAAEIEKNEDIRKENFEALMNSVLKVKENSIKATNNFEKMLGS 754


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 8   GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 136
           G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 11  GKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,310
Number of Sequences: 5004
Number of extensions: 45460
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)